We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorZNF18
(GeneCards)
ModelZNF18_HUMAN.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
C
Motif rank
0
ConsensusnRGTGTGAAYhbn
Best auROC (human)0.96
Best auROC (mouse)
Peak sets in benchmark (human)4
Peak sets in benchmark (mouse)
Aligned words532
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyunclassified {2.3.3.0}
HGNCHGNC:12969
EntrezGeneGeneID:7566
(SSTAR profile)
UniProt IDZNF18_HUMAN
UniProt ACP17022
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.536415
0.0005 8.988859999999999
0.0001 14.276129999999998
GTEx tissue expression atlas ZNF18 expression
ReMap ChIP-seq dataset list ZNF18 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0134.00.075.02.040.00.034.013.049.01.058.016.025.00.0129.08.0
020.03.0145.00.00.00.01.00.01.00.0295.00.00.00.039.00.0
030.00.00.01.00.00.00.03.08.01.00.0471.00.00.00.00.0
042.01.05.00.00.00.01.00.00.00.00.00.03.00.0472.00.0
050.00.00.05.00.00.00.01.010.01.056.0411.00.00.00.00.0
060.00.010.00.00.00.01.00.01.00.055.00.02.00.0414.01.0
073.00.00.00.00.00.00.00.0454.013.00.013.00.00.01.00.0
08368.012.045.032.010.01.01.01.01.00.00.00.011.00.00.02.0
0911.0249.061.069.00.04.00.09.03.024.03.016.00.024.04.07.0
103.03.03.05.059.080.027.0135.017.018.06.027.028.017.021.035.0
118.048.037.014.035.040.024.019.010.021.08.018.06.023.0159.014.0
1212.021.018.08.042.033.023.034.036.033.095.064.08.012.037.08.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.115-4.3730.9-2.5520.276-4.3730.115-0.8280.477-3.0950.645-0.626-0.188-4.3731.441-1.296
02-4.373-2.2021.557-4.373-4.373-4.373-3.095-4.373-3.095-4.3732.266-4.373-4.373-4.3730.251-4.373
03-4.373-4.373-4.373-3.095-4.373-4.373-4.373-2.202-1.296-3.095-4.3732.733-4.373-4.373-4.373-4.373
04-2.552-3.095-1.738-4.373-4.373-4.373-3.095-4.373-4.373-4.373-4.373-4.373-2.202-4.3732.736-4.373
05-4.373-4.373-4.373-1.738-4.373-4.373-4.373-3.095-1.082-3.0950.612.597-4.373-4.373-4.373-4.373
06-4.373-4.373-1.082-4.373-4.373-4.373-3.095-4.373-3.095-4.3730.592-4.373-2.552-4.3732.605-3.095
07-2.202-4.373-4.373-4.373-4.373-4.373-4.373-4.3732.697-0.828-4.373-0.828-4.373-4.373-3.095-4.373
082.487-0.9060.3930.056-1.082-3.095-3.095-3.095-3.095-4.373-4.373-4.373-0.99-4.373-4.373-2.552
09-0.992.0970.6950.818-4.373-1.944-4.373-1.183-2.202-0.228-2.202-0.626-4.373-0.228-1.944-1.423
10-2.202-2.202-2.202-1.7380.6620.965-0.1121.486-0.567-0.511-1.568-0.112-0.076-0.567-0.3590.144
11-1.2960.4570.199-0.7560.1440.276-0.228-0.458-1.082-0.359-1.296-0.511-1.568-0.271.649-0.756
12-0.906-0.359-0.511-1.2960.3250.086-0.270.1150.1720.0861.1360.743-1.296-0.9060.199-1.296