We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorZNF18
(GeneCards)
ModelZNF18_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
C
Motif rank
0
ConsensusRGTGTGARYhbd
Best auROC (human)0.952
Best auROC (mouse)
Peak sets in benchmark (human)4
Peak sets in benchmark (mouse)
Aligned words500
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyunclassified {2.3.3.0}
HGNCHGNC:12969
EntrezGeneGeneID:7566
(SSTAR profile)
UniProt IDZNF18_HUMAN
UniProt ACP17022
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.9070099999999996
0.0005 4.99155
0.0001 7.246700000000001
GTEx tissue expression atlas ZNF18 expression
ReMap ChIP-seq dataset list ZNF18 datasets
Motifs in JASPAR
PCM
ACGT
01147.07.0307.039.0
022.04.0494.00.0
039.00.05.0486.0
0411.03.0485.01.0
0528.01.044.0427.0
063.07.0490.00.0
07476.014.03.07.0
08393.08.065.034.0
0913.0292.084.0111.0
10125.0116.048.0211.0
1145.0134.0241.080.0
12104.089.0206.0101.0
PWM
ACGT
010.16-2.6940.891-1.138
02-3.573-3.1261.365-4.4
03-2.484-4.4-2.9611.349
04-2.311-3.3251.347-3.903
05-1.454-3.903-1.0221.22
06-3.325-2.6941.357-4.4
071.328-2.096-3.325-2.694
081.137-2.584-0.643-1.27
09-2.1630.841-0.392-0.117
100.0-0.074-0.9380.519
11-1.00.0690.651-0.439
12-0.181-0.3350.495-0.21