Model info
| Transcription factor | ZNF18 (GeneCards) | ||||||||
| Model | ZNF18_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RGTGTGARYhbd | ||||||||
| Best auROC (human) | 0.952 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 4 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 500 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | unclassified {2.3.3.0} | ||||||||
| HGNC | HGNC:12969 | ||||||||
| EntrezGene | GeneID:7566 (SSTAR profile) | ||||||||
| UniProt ID | ZNF18_HUMAN | ||||||||
| UniProt AC | P17022 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ZNF18 expression | ||||||||
| ReMap ChIP-seq dataset list | ZNF18 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 147.0 | 7.0 | 307.0 | 39.0 |
| 02 | 2.0 | 4.0 | 494.0 | 0.0 |
| 03 | 9.0 | 0.0 | 5.0 | 486.0 |
| 04 | 11.0 | 3.0 | 485.0 | 1.0 |
| 05 | 28.0 | 1.0 | 44.0 | 427.0 |
| 06 | 3.0 | 7.0 | 490.0 | 0.0 |
| 07 | 476.0 | 14.0 | 3.0 | 7.0 |
| 08 | 393.0 | 8.0 | 65.0 | 34.0 |
| 09 | 13.0 | 292.0 | 84.0 | 111.0 |
| 10 | 125.0 | 116.0 | 48.0 | 211.0 |
| 11 | 45.0 | 134.0 | 241.0 | 80.0 |
| 12 | 104.0 | 89.0 | 206.0 | 101.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.16 | -2.694 | 0.891 | -1.138 |
| 02 | -3.573 | -3.126 | 1.365 | -4.4 |
| 03 | -2.484 | -4.4 | -2.961 | 1.349 |
| 04 | -2.311 | -3.325 | 1.347 | -3.903 |
| 05 | -1.454 | -3.903 | -1.022 | 1.22 |
| 06 | -3.325 | -2.694 | 1.357 | -4.4 |
| 07 | 1.328 | -2.096 | -3.325 | -2.694 |
| 08 | 1.137 | -2.584 | -0.643 | -1.27 |
| 09 | -2.163 | 0.841 | -0.392 | -0.117 |
| 10 | 0.0 | -0.074 | -0.938 | 0.519 |
| 11 | -1.0 | 0.069 | 0.651 | -0.439 |
| 12 | -0.181 | -0.335 | 0.495 | -0.21 |