Model info
| Transcription factor | ZNF41 (GeneCards) | ||||||||
| Model | ZNF41_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 24 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vRMRRGRRARhvvRvSACMAWSWR | ||||||||
| Best auROC (human) | 0.894 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 4 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 349 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | ZFN81-like factors {2.3.3.68} | ||||||||
| HGNC | HGNC:13107 | ||||||||
| EntrezGene | GeneID:7592 (SSTAR profile) | ||||||||
| UniProt ID | ZNF41_HUMAN | ||||||||
| UniProt AC | P51814 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ZNF41 expression | ||||||||
| ReMap ChIP-seq dataset list | ZNF41 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 89.0 | 175.0 | 44.0 | 41.0 |
| 02 | 249.0 | 35.0 | 46.0 | 19.0 |
| 03 | 37.0 | 252.0 | 25.0 | 35.0 |
| 04 | 260.0 | 22.0 | 49.0 | 18.0 |
| 05 | 248.0 | 3.0 | 87.0 | 11.0 |
| 06 | 24.0 | 7.0 | 304.0 | 14.0 |
| 07 | 39.0 | 12.0 | 275.0 | 23.0 |
| 08 | 137.0 | 3.0 | 208.0 | 1.0 |
| 09 | 331.0 | 3.0 | 10.0 | 5.0 |
| 10 | 155.0 | 26.0 | 163.0 | 5.0 |
| 11 | 79.0 | 69.0 | 41.0 | 160.0 |
| 12 | 151.0 | 76.0 | 71.0 | 51.0 |
| 13 | 184.0 | 41.0 | 89.0 | 35.0 |
| 14 | 124.0 | 13.0 | 174.0 | 38.0 |
| 15 | 87.0 | 75.0 | 144.0 | 43.0 |
| 16 | 19.0 | 260.0 | 41.0 | 29.0 |
| 17 | 338.0 | 2.0 | 6.0 | 3.0 |
| 18 | 13.0 | 318.0 | 16.0 | 2.0 |
| 19 | 81.0 | 242.0 | 8.0 | 18.0 |
| 20 | 290.0 | 4.0 | 43.0 | 12.0 |
| 21 | 41.0 | 17.0 | 40.0 | 251.0 |
| 22 | 34.0 | 60.0 | 226.0 | 29.0 |
| 23 | 247.0 | 16.0 | 42.0 | 44.0 |
| 24 | 54.0 | 29.0 | 228.0 | 38.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.02 | 0.688 | -0.668 | -0.737 |
| 02 | 1.038 | -0.889 | -0.625 | -1.467 |
| 03 | -0.836 | 1.05 | -1.21 | -0.889 |
| 04 | 1.081 | -1.33 | -0.564 | -1.517 |
| 05 | 1.034 | -2.989 | -0.003 | -1.963 |
| 06 | -1.248 | -2.35 | 1.236 | -1.747 |
| 07 | -0.785 | -1.885 | 1.137 | -1.288 |
| 08 | 0.445 | -2.989 | 0.859 | -3.584 |
| 09 | 1.321 | -2.989 | -2.046 | -2.619 |
| 10 | 0.567 | -1.173 | 0.617 | -2.619 |
| 11 | -0.098 | -0.23 | -0.737 | 0.599 |
| 12 | 0.542 | -0.136 | -0.202 | -0.525 |
| 13 | 0.737 | -0.737 | 0.02 | -0.889 |
| 14 | 0.347 | -1.814 | 0.682 | -0.81 |
| 15 | -0.003 | -0.149 | 0.495 | -0.691 |
| 16 | -1.467 | 1.081 | -0.737 | -1.069 |
| 17 | 1.342 | -3.243 | -2.475 | -2.989 |
| 18 | -1.814 | 1.281 | -1.625 | -3.243 |
| 19 | -0.073 | 1.01 | -2.238 | -1.517 |
| 20 | 1.19 | -2.787 | -0.691 | -1.885 |
| 21 | -0.737 | -1.57 | -0.761 | 1.046 |
| 22 | -0.917 | -0.367 | 0.942 | -1.069 |
| 23 | 1.03 | -1.625 | -0.713 | -0.668 |
| 24 | -0.47 | -1.069 | 0.95 | -0.81 |