Model info
| Transcription factor | ZNF41 (GeneCards) | ||||||||
| Model | ZNF41_HUMAN.H11MO.1.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | C | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | MAYARGGRARhv | ||||||||
| Best auROC (human) | 0.854 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 4 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 500 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | ZFN81-like factors {2.3.3.68} | ||||||||
| HGNC | HGNC:13107 | ||||||||
| EntrezGene | GeneID:7592 (SSTAR profile) | ||||||||
| UniProt ID | ZNF41_HUMAN | ||||||||
| UniProt AC | P51814 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ZNF41 expression | ||||||||
| ReMap ChIP-seq dataset list | ZNF41 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 142.0 | 310.0 | 33.0 | 15.0 |
| 02 | 407.0 | 24.0 | 68.0 | 1.0 |
| 03 | 64.0 | 283.0 | 19.0 | 134.0 |
| 04 | 352.0 | 8.0 | 137.0 | 3.0 |
| 05 | 379.0 | 8.0 | 89.0 | 24.0 |
| 06 | 1.0 | 4.0 | 493.0 | 2.0 |
| 07 | 14.0 | 12.0 | 413.0 | 61.0 |
| 08 | 200.0 | 1.0 | 297.0 | 2.0 |
| 09 | 491.0 | 0.0 | 5.0 | 4.0 |
| 10 | 180.0 | 18.0 | 278.0 | 24.0 |
| 11 | 184.0 | 67.0 | 66.0 | 183.0 |
| 12 | 174.0 | 94.0 | 163.0 | 69.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.126 | 0.901 | -1.298 | -2.034 |
| 02 | 1.172 | -1.6 | -0.599 | -3.903 |
| 03 | -0.658 | 0.81 | -1.818 | 0.069 |
| 04 | 1.027 | -2.584 | 0.091 | -3.325 |
| 05 | 1.101 | -2.584 | -0.335 | -1.6 |
| 06 | -3.903 | -3.126 | 1.363 | -3.573 |
| 07 | -2.096 | -2.234 | 1.187 | -0.705 |
| 08 | 0.465 | -3.903 | 0.858 | -3.573 |
| 09 | 1.359 | -4.4 | -2.961 | -3.126 |
| 10 | 0.361 | -1.868 | 0.793 | -1.6 |
| 11 | 0.383 | -0.613 | -0.628 | 0.377 |
| 12 | 0.327 | -0.281 | 0.263 | -0.584 |