Model info
| Transcription factor | ZSCAN4 (GeneCards) | ||||||||
| Model | ZSCA4_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 12 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | AGKGTGTGCAhh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 1158 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | ZSCAN5-like zinc finger factors {2.3.3.5} | ||||||||
| HGNC | HGNC:23709 | ||||||||
| EntrezGene | GeneID:201516 (SSTAR profile) | ||||||||
| UniProt ID | ZSCA4_HUMAN | ||||||||
| UniProt AC | Q8NAM6 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ZSCAN4 expression | ||||||||
| ReMap ChIP-seq dataset list | ZSCAN4 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1156.0 | 0.0 | 0.0 | 0.0 |
| 02 | 0.0 | 0.0 | 1156.0 | 0.0 |
| 03 | 0.0 | 141.0 | 188.0 | 827.0 |
| 04 | 0.0 | 0.0 | 1156.0 | 0.0 |
| 05 | 0.0 | 0.0 | 0.0 | 1156.0 |
| 06 | 0.0 | 0.0 | 1156.0 | 0.0 |
| 07 | 0.0 | 0.0 | 0.0 | 1156.0 |
| 08 | 0.0 | 0.0 | 1156.0 | 0.0 |
| 09 | 0.0 | 1148.0 | 0.0 | 8.0 |
| 10 | 1144.75 | 0.75 | 8.75 | 1.75 |
| 11 | 204.5 | 538.5 | 194.5 | 218.5 |
| 12 | 275.5 | 213.5 | 105.5 | 561.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.382 | -5.105 | -5.105 | -5.105 |
| 02 | -5.105 | -5.105 | 1.382 | -5.105 |
| 03 | -5.105 | -0.711 | -0.427 | 1.047 |
| 04 | -5.105 | -5.105 | 1.382 | -5.105 |
| 05 | -5.105 | -5.105 | -5.105 | 1.382 |
| 06 | -5.105 | -5.105 | 1.382 | -5.105 |
| 07 | -5.105 | -5.105 | -5.105 | 1.382 |
| 08 | -5.105 | -5.105 | 1.382 | -5.105 |
| 09 | -5.105 | 1.375 | -5.105 | -3.394 |
| 10 | 1.372 | -4.751 | -3.32 | -4.416 |
| 11 | -0.343 | 0.62 | -0.393 | -0.278 |
| 12 | -0.048 | -0.301 | -0.997 | 0.661 |