PWMs for transcription factors
| Model | LOGO | Transcription factor | Model length | Quality | Model rank | Consensus | Model release | Data source | Best auROC (human) | Best auROC (mouse) | Peak sets in benchmark (human) | Peak sets in benchmark (mouse) | Aligned words | TF family | TF subfamily | HGNC | MGI | EntrezGene | UniProt ID | UniProt AC |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CDX1_HUMAN.H11MO.0.C |  |
HUMAN:CDX1 | 8 | C | 0 | hTTKAWGd | HOCOMOCOv9 | Integrative | 30 | HOX-related factors{3.1.1} | CDX (Caudal type homeobox){3.1.1.9} | 1805 | 1044 | CDX1_HUMAN | P47902 | |||||
| CDX2_HUMAN.H11MO.0.A |  |
HUMAN:CDX2 | 12 | A | 0 | dTTbATKGShbY | HOCOMOCOv11 | ChIP-Seq | 0.923 | 0.982 | 13 | 23 | 151 | HOX-related factors{3.1.1} | CDX (Caudal type homeobox){3.1.1.9} | 1806 | 1045 | CDX2_HUMAN | Q99626 | |
| CDX2_HUMAN.H11DI.0.A |  |
HUMAN:CDX2 | 14 | A | 0 | nbddbTTTATKRYn | HOCOMOCOv11 | ChIP-Seq | 0.931 | 0.989 | 13 | 23 | 340 | HOX-related factors{3.1.1} | CDX (Caudal type homeobox){3.1.1.9} | 1806 | 1045 | CDX2_HUMAN | Q99626 | |
| CDX1_MOUSE.H11MO.0.C |  |
MOUSE:Cdx1 | 8 | C | 0 | hTTKAWGd | HOCOMOCOv9 | Integrative | 30 | HOX-related factors{3.1.1} | CDX (Caudal type homeobox){3.1.1.9} | 88360 | 12590 | CDX1_MOUSE | P18111 | |||||
| CDX2_MOUSE.H11MO.0.A |  |
MOUSE:Cdx2 | 12 | A | 0 | bTTTATKRYhbb | HOCOMOCOv11 | ChIP-Seq | 0.916 | 0.99 | 13 | 23 | 500 | HOX-related factors{3.1.1} | CDX (Caudal type homeobox){3.1.1.9} | 88361 | 12591 | CDX2_MOUSE | P43241 | |
| CDX4_MOUSE.H11MO.0.A RETRACTED!!! |  |
MOUSE:Cdx4 | 12 | A | 0 | WRATTdAYdRbh | HOCOMOCOv11 | ChIP-Seq | 0.955 | 7 | 500 | HOX-related factors{3.1.1} | CDX (Caudal type homeobox){3.1.1.9} | 88362 | 12592 | CDX4_MOUSE | Q07424 | |||
| CDX2_MOUSE.H11DI.0.A |  |
MOUSE:Cdx2 | 14 | A | 0 | nnbTTTATKRShbh | HOCOMOCOv11 | ChIP-Seq | 0.927 | 0.989 | 13 | 23 | 500 | HOX-related factors{3.1.1} | CDX (Caudal type homeobox){3.1.1.9} | 88361 | 12591 | CDX2_MOUSE | P43241 | |
| CDX4_MOUSE.H11DI.0.A RETRACTED!!! |  |
MOUSE:Cdx4 | 14 | A | 0 | nWRATTTAYdRbbn | HOCOMOCOv11 | ChIP-Seq | 0.958 | 7 | 500 | HOX-related factors{3.1.1} | CDX (Caudal type homeobox){3.1.1.9} | 88362 | 12592 | CDX4_MOUSE | Q07424 |