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PWMs for transcription factors
Model Transcription factor Model length Quality
 Model rank Consensus Model release Data source Best auROC (human) Best auROC (mouse) Peak sets in benchmark (human) Peak sets in benchmark (mouse) Aligned words TF family TF subfamily HGNC MGI EntrezGene UniProt ID UniProt AC
GBX1_HUMAN.H11MO.0.D HUMAN:GBX1 17 D 0 bTAATTAvbnhhWWWdd HOCOMOCOv10 HT-SELEX 38677 HOX-related factors{3.1.1} GBX (Gastrulation brain homeobox){3.1.1.11} 4185 2636 GBX1_HUMAN Q14549
GBX2_HUMAN.H11MO.0.D HUMAN:GBX2 17 D 0 bYAATTRvbnhhhWWWd HOCOMOCOv10 HT-SELEX 12613 HOX-related factors{3.1.1} GBX (Gastrulation brain homeobox){3.1.1.11} 4186 2637 GBX2_HUMAN P52951
GSX1_HUMAN.H11MO.0.D HUMAN:GSX1 15 D 0 hRATKRvndddWdRK HOCOMOCOv10 HT-SELEX 277 HOX-related factors{3.1.1} GSX{3.1.1.12} 20374 219409 GSX1_HUMAN Q9H4S2
GSX2_HUMAN.H11MO.0.D HUMAN:GSX2 16 D 0 bTAATKRvnddWWWAY HOCOMOCOv10 HT-SELEX 6133 HOX-related factors{3.1.1} GSX{3.1.1.12} 24959 170825 GSX2_HUMAN Q9BZM3
HXA1_HUMAN.H11MO.0.C HUMAN:HOXA1 10 C 0 nTGATGGATG HOCOMOCOv9 Integrative 8 HOX-related factors{3.1.1} HOX1{3.1.1.1} 5099 3198 HXA1_HUMAN P49639
HXB1_HUMAN.H11MO.0.D HUMAN:HOXB1 10 D 0 WGATGGATGG HOCOMOCOv9 Integrative 15 HOX-related factors{3.1.1} HOX1{3.1.1.1} 5111 3211 HXB1_HUMAN P14653
MEOX1_HUMAN.H11MO.0.D HUMAN:MEOX1 16 D 0 nbTAATTAnbRbhWWh HOCOMOCOv10 HT-SELEX 61 HOX-related factors{3.1.1} MEOX{3.1.1.14} 7013 4222 MEOX1_HUMAN P50221
MEOX2_HUMAN.H11MO.0.D HUMAN:MEOX2 11 D 0 hTAATTAbndh HOCOMOCOv10 HT-SELEX 40067 HOX-related factors{3.1.1} MEOX{3.1.1.14} 7014 4223 MEOX2_HUMAN P50222
MNX1_HUMAN.H11MO.0.D HUMAN:MNX1 19 D 0 hbWYTYdMnWhWCYhYnhh HOCOMOCOv10 HT-SELEX 27 HOX-related factors{3.1.1} MNX{3.1.1.13} 4979 3110 MNX1_HUMAN P50219
PDX1_HUMAN.H11MO.0.A HUMAN:PDX1 9 A 0 TGAYWRAKK HOCOMOCOv11 ChIP-Seq 0.96 0.814 10 4 494 HOX-related factors{3.1.1} PDX{3.1.1.15} 6107 3651 PDX1_HUMAN P52945
PDX1_HUMAN.H11MO.1.A HUMAN:PDX1 9 A 1 dYTAATKRb HOCOMOCOv11 ChIP-Seq 0.824 0.827 10 4 504 HOX-related factors{3.1.1} PDX{3.1.1.15} 6107 3651 PDX1_HUMAN P52945
EVX1_HUMAN.H11MO.0.D RETRACTED!!! HUMAN:EVX1 13 D 0 WGATTKATKdbhh HOCOMOCOv10 ChIP-Seq 0.43 0.978 2 4 500 HOX-related factors{3.1.1} EVX (Even-skipped homolog){3.1.1.10} 3506 2128 EVX1_HUMAN P49640
EVX2_HUMAN.H11MO.0.A RETRACTED!!! HUMAN:EVX2 13 A 0 nbTTTATKRYhbb HOCOMOCOv11 ChIP-Seq 0.954 0.923 11 4 500 HOX-related factors{3.1.1} EVX (Even-skipped homolog){3.1.1.10} 3507 344191 EVX2_HUMAN Q03828
PDX1_HUMAN.H11DI.0.A HUMAN:PDX1 12 A 0 dTGATWRAKKdb HOCOMOCOv11 ChIP-Seq 0.976 0.814 10 4 377 HOX-related factors{3.1.1} PDX{3.1.1.15} 6107 3651 PDX1_HUMAN P52945
EVX1_HUMAN.H11DI.0.D RETRACTED!!! HUMAN:EVX1 17 D 0 nWRATTKATKRbhhnnn HOCOMOCOv10 ChIP-Seq 0.478 0.991 2 4 500 HOX-related factors{3.1.1} EVX (Even-skipped homolog){3.1.1.10} 3506 2128 EVX1_HUMAN P49640
EVX2_HUMAN.H11DI.0.A RETRACTED!!! HUMAN:EVX2 21 A 0 nndnnnnnnTTTATKRYhbhn HOCOMOCOv10 ChIP-Seq 0.974 0.883 11 4 494 HOX-related factors{3.1.1} EVX (Even-skipped homolog){3.1.1.10} 3507 344191 EVX2_HUMAN Q03828
HXA1_MOUSE.H11MO.0.C MOUSE:Hoxa1 10 C 0 nTGATGGATG HOCOMOCOv9 Integrative 8 HOX-related factors{3.1.1} HOX1{3.1.1.1} 96170 HXA1_MOUSE P09022
HXB1_MOUSE.H11MO.0.D MOUSE:Hoxb1 10 D 0 WGATGGATGG HOCOMOCOv9 Integrative 15 HOX-related factors{3.1.1} HOX1{3.1.1.1} 96182 15407 HXB1_MOUSE P17919
PDX1_MOUSE.H11MO.0.B MOUSE:Pdx1 9 B 0 vYTAATGRb HOCOMOCOv11 ChIP-Seq 0.752 0.895 10 4 500 HOX-related factors{3.1.1} PDX{3.1.1.15} 102851 18609 PDX1_MOUSE P52946
EVX1_MOUSE.H11MO.0.C RETRACTED!!! MOUSE:Evx1 13 C 0 WGATTKATKdbhh HOCOMOCOv10 ChIP-Seq 0.43 0.978 2 4 500 HOX-related factors{3.1.1} EVX (Even-skipped homolog){3.1.1.10} 95461 14028 EVX1_MOUSE P23683
EVX2_MOUSE.H11MO.0.A RETRACTED!!! MOUSE:Evx2 12 A 0 bTTTATKRYhbb HOCOMOCOv11 ChIP-Seq 0.929 0.964 11 4 500 HOX-related factors{3.1.1} EVX (Even-skipped homolog){3.1.1.10} 95462 14029 EVX2_MOUSE P49749
PDX1_MOUSE.H11DI.0.A MOUSE:Pdx1 12 A 0 dTGAYWRAKKdn HOCOMOCOv11 ChIP-Seq 0.949 0.905 10 4 503 HOX-related factors{3.1.1} PDX{3.1.1.15} 102851 18609 PDX1_MOUSE P52946
EVX1_MOUSE.H11DI.0.C RETRACTED!!! MOUSE:Evx1 17 C 0 nWRATTKATKRbhhnnn HOCOMOCOv10 ChIP-Seq 0.478 0.991 2 4 500 HOX-related factors{3.1.1} EVX (Even-skipped homolog){3.1.1.10} 95461 14028 EVX1_MOUSE P23683
EVX2_MOUSE.H11DI.0.A RETRACTED!!! MOUSE:Evx2 14 A 0 nbbTTTATKGYhbb HOCOMOCOv11 ChIP-Seq 0.934 0.971 11 4 250 HOX-related factors{3.1.1} EVX (Even-skipped homolog){3.1.1.10} 95462 14029 EVX2_MOUSE P49749