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PWMs for transcription factors
Model Transcription factor Model length Quality
 Model rank Consensus Model release Data source Best auROC (human) Best auROC (mouse) Peak sets in benchmark (human) Peak sets in benchmark (mouse) Aligned words TF family TF subfamily HGNC MGI EntrezGene UniProt ID UniProt AC
SMAD1_HUMAN.H11MO.0.D HUMAN:SMAD1 12 D 0 dGCCTSTCTGYM HOCOMOCOv9 Integrative 12 SMAD factors{7.1.1} Regulatory Smads (R-Smad){7.1.1.1} 6767 4086 SMAD1_HUMAN Q15797
SMAD2_HUMAN.H11MO.0.A HUMAN:SMAD2 12 A 0 WGKCTSnChCYb HOCOMOCOv11 ChIP-Seq 0.848 0.808 17 26 500 SMAD factors{7.1.1} Regulatory Smads (R-Smad){7.1.1.1} 6768 4087 SMAD2_HUMAN Q15796
SMAD3_HUMAN.H11MO.0.B HUMAN:SMAD3 12 B 0 vbYTShCWSCWb HOCOMOCOv11 ChIP-Seq 0.806 0.707 34 30 500 SMAD factors{7.1.1} Regulatory Smads (R-Smad){7.1.1.1} 6769 4088 SMAD3_HUMAN P84022
SMAD4_HUMAN.H11MO.0.B HUMAN:SMAD4 13 B 0 vWGKCTSdCWSYh HOCOMOCOv11 ChIP-Seq 0.869 0.671 24 3 497 SMAD factors{7.1.1} Co-activating Smads (Co-Smad){7.1.1.2} 6770 4089 SMAD4_HUMAN Q13485
SMAD2_HUMAN.H11DI.0.A HUMAN:SMAD2 15 A 0 nvWGKCTSnYhCYhn HOCOMOCOv11 ChIP-Seq 0.864 0.844 17 26 504 SMAD factors{7.1.1} Regulatory Smads (R-Smad){7.1.1.1} 6768 4087 SMAD2_HUMAN Q15796
SMAD3_HUMAN.H11DI.0.C HUMAN:SMAD3 14 C 0 nhvbYTvbCWSMhn HOCOMOCOv11 ChIP-Seq 0.799 0.682 34 30 506 SMAD factors{7.1.1} Regulatory Smads (R-Smad){7.1.1.1} 6769 4088 SMAD3_HUMAN P84022
SMAD4_HUMAN.H11DI.0.A HUMAN:SMAD4 21 A 0 nnbWGKCTvdCWSYYnnnnnn HOCOMOCOv10 ChIP-Seq 0.882 0.926 24 3 500 SMAD factors{7.1.1} Co-activating Smads (Co-Smad){7.1.1.2} 6770 4089 SMAD4_HUMAN Q13485
SMAD1_MOUSE.H11MO.0.D MOUSE:Smad1 12 D 0 dGCCTSTCTGYM HOCOMOCOv9 Integrative 12 SMAD factors{7.1.1} Regulatory Smads (R-Smad){7.1.1.1} 109452 17125 SMAD1_MOUSE P70340
SMAD2_MOUSE.H11MO.0.A MOUSE:Smad2 9 A 0 dvTGYCTGb HOCOMOCOv11 ChIP-Seq 0.803 0.885 17 26 500 SMAD factors{7.1.1} Regulatory Smads (R-Smad){7.1.1.1} 108051 17126 SMAD2_MOUSE Q62432
SMAD3_MOUSE.H11MO.0.B MOUSE:Smad3 12 B 0 vbYTShCWSCWb HOCOMOCOv11 ChIP-Seq 0.806 0.707 34 30 500 SMAD factors{7.1.1} Regulatory Smads (R-Smad){7.1.1.1} 1201674 17127 SMAD3_MOUSE Q8BUN5
SMAD4_MOUSE.H11MO.0.A MOUSE:Smad4 12 A 0 vWGbCTvnChSh HOCOMOCOv11 ChIP-Seq 0.835 0.873 24 3 489 SMAD factors{7.1.1} Co-activating Smads (Co-Smad){7.1.1.2} 894293 17128 SMAD4_MOUSE P97471
SMAD2_MOUSE.H11DI.0.A MOUSE:Smad2 14 A 0 nbTGTYTGbbhhbn HOCOMOCOv11 ChIP-Seq 0.849 0.901 17 26 501 SMAD factors{7.1.1} Regulatory Smads (R-Smad){7.1.1.1} 108051 17126 SMAD2_MOUSE Q62432
SMAD3_MOUSE.H11DI.0.C MOUSE:Smad3 14 C 0 nhvbYTvbCWSMhn HOCOMOCOv11 ChIP-Seq 0.799 0.682 34 30 506 SMAD factors{7.1.1} Regulatory Smads (R-Smad){7.1.1.1} 1201674 17127 SMAD3_MOUSE Q8BUN5
SMAD4_MOUSE.H11DI.0.A MOUSE:Smad4 21 A 0 nnbWGKCTvdCWSYYnnnnnn HOCOMOCOv10 ChIP-Seq 0.882 0.926 24 3 500 SMAD factors{7.1.1} Co-activating Smads (Co-Smad){7.1.1.2} 894293 17128 SMAD4_MOUSE P97471