Check the newest release v13
PWMs for transcription factors
Model Transcription factor Model length Quality
 Model rank Consensus Model release Data source Best auROC (human) Best auROC (mouse) Peak sets in benchmark (human) Peak sets in benchmark (mouse) Aligned words TF family TF subfamily HGNC MGI EntrezGene UniProt ID UniProt AC
SOX1_HUMAN.H11MO.0.D HUMAN:SOX1 16 D 0 dRTSAATGKTATTCAK HOCOMOCOv10 HT-SELEX 40 SOX-related factors{4.1.1} Group B{4.1.1.2} 11189 6656 SOX1_HUMAN O00570
SOX21_HUMAN.H11MO.0.D HUMAN:SOX21 16 D 0 dRWSAATGdYAKTSWb HOCOMOCOv10 HT-SELEX 14076 SOX-related factors{4.1.1} Group B{4.1.1.2} 11197 11166 SOX21_HUMAN Q9Y651
SOX2_HUMAN.H11MO.0.A HUMAN:SOX2 13 A 0 bbYCTTTGTbhbb HOCOMOCOv11 ChIP-Seq 0.944 0.922 67 109 500 SOX-related factors{4.1.1} Group B{4.1.1.2} 11195 6657 SOX2_HUMAN P48431
SOX2_HUMAN.H11MO.1.A HUMAN:SOX2 16 A 1 bYYWTTSTbhTKYhdW HOCOMOCOv11 ChIP-Seq 0.957 0.955 67 109 500 SOX-related factors{4.1.1} Group B{4.1.1.2} 11195 6657 SOX2_HUMAN P48431
SOX3_HUMAN.H11MO.0.B HUMAN:SOX3 11 B 0 bYCWTTGTbhb HOCOMOCOv11 ChIP-Seq 0.717 0.882 2 4 500 SOX-related factors{4.1.1} Group B{4.1.1.2} 11199 6658 SOX3_HUMAN P41225
SOX2_HUMAN.H11DI.0.A HUMAN:SOX2 18 A 0 nbYYWTTSTbhYbbhddh HOCOMOCOv11 ChIP-Seq 0.975 0.974 67 109 388 SOX-related factors{4.1.1} Group B{4.1.1.2} 11195 6657 SOX2_HUMAN P48431
SOX3_HUMAN.H11DI.0.B HUMAN:SOX3 10 B 0 bSYWTTGTbn HOCOMOCOv11 ChIP-Seq 0.685 0.888 2 4 456 SOX-related factors{4.1.1} Group B{4.1.1.2} 11199 6658 SOX3_HUMAN P41225
SOX2_MOUSE.H11MO.0.A MOUSE:Sox2 16 A 0 bbYWTTSTnWTKYWdW HOCOMOCOv11 ChIP-Seq 0.955 0.958 67 109 499 SOX-related factors{4.1.1} Group B{4.1.1.2} 98364 20674 SOX2_MOUSE P48432
SOX2_MOUSE.H11MO.1.A MOUSE:Sox2 13 A 1 hbYYWTTGTbhbb HOCOMOCOv11 ChIP-Seq 0.944 0.926 67 109 500 SOX-related factors{4.1.1} Group B{4.1.1.2} 98364 20674 SOX2_MOUSE P48432
SOX3_MOUSE.H11MO.0.C MOUSE:Sox3 11 C 0 bYCTTTGTbnb HOCOMOCOv11 ChIP-Seq 0.559 0.914 2 4 344 SOX-related factors{4.1.1} Group B{4.1.1.2} 98365 SOX3_MOUSE P53784
SOX2_MOUSE.H11DI.0.A MOUSE:Sox2 19 A 0 nbSYWTTGTbhWKbhnMhn HOCOMOCOv11 ChIP-Seq 0.971 0.976 67 109 512 SOX-related factors{4.1.1} Group B{4.1.1.2} 98364 20674 SOX2_MOUSE P48432
SOX3_MOUSE.H11DI.0.C MOUSE:Sox3 13 C 0 nbYCWTTGTbbbb HOCOMOCOv11 ChIP-Seq 0.595 0.911 2 4 348 SOX-related factors{4.1.1} Group B{4.1.1.2} 98365 SOX3_MOUSE P53784