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PWMs for transcription factors
Model Transcription factor Model length Quality
 Model rank Consensus Model release Data source Best auROC (human) Best auROC (mouse) Peak sets in benchmark (human) Peak sets in benchmark (mouse) Aligned words TF family TF subfamily HGNC MGI EntrezGene UniProt ID UniProt AC
ISL1_HUMAN.H11MO.0.A HUMAN:ISL1 9 A 0 vYWRAKKRv HOCOMOCOv11 ChIP-Seq 0.805 0.858 3 13 500 HD-LIM factors{3.1.5} ISL{3.1.5.1} 6132 3670 ISL1_HUMAN P61371
ISL2_HUMAN.H11MO.0.D HUMAN:ISL2 11 D 0 hnbTAAKTGvh HOCOMOCOv10 HT-SELEX 16988 HD-LIM factors{3.1.5} ISL{3.1.5.1} 18524 64843 ISL2_HUMAN Q96A47
LHX2_HUMAN.H11MO.0.A HUMAN:LHX2 12 A 0 bbYTAATTRvhb HOCOMOCOv11 ChIP-Seq 0.826 0.931 5 12 430 HD-LIM factors{3.1.5} Lhx-2-like factors{3.1.5.3} 6594 9355 LHX2_HUMAN P50458
LHX3_HUMAN.H11MO.0.C HUMAN:LHX3 13 C 0 ddAWTTAATTAdh HOCOMOCOv9 Integrative 72 HD-LIM factors{3.1.5} Lhx-3-like factors{3.1.5.4} 6595 8022 LHX3_HUMAN Q9UBR4
LHX4_HUMAN.H11MO.0.D HUMAN:LHX4 11 D 0 dnvYTAATKdn HOCOMOCOv10 HT-SELEX 1423 HD-LIM factors{3.1.5} Lhx-3-like factors{3.1.5.4} 21734 89884 LHX4_HUMAN Q969G2
LHX6_HUMAN.H11MO.0.D HUMAN:LHX6 10 D 0 nnYTGATTRv HOCOMOCOv11 ChIP-Seq 0.567 0.95 1 2 444 HD-LIM factors{3.1.5} Lhx-6-like factors{3.1.5.5} 21735 26468 LHX6_HUMAN Q9UPM6
LHX8_HUMAN.H11MO.0.D HUMAN:LHX8 18 D 0 hvYTAATTRShvhYWWdd HOCOMOCOv10 HT-SELEX 9063 HD-LIM factors{3.1.5} Lhx-6-like factors{3.1.5.5} 28838 431707 LHX8_HUMAN Q68G74
LHX9_HUMAN.H11MO.0.D HUMAN:LHX9 18 D 0 bTAATTARbnhhWWWWdd HOCOMOCOv10 HT-SELEX 4409 HD-LIM factors{3.1.5} Lhx-2-like factors{3.1.5.3} 14222 56956 LHX9_HUMAN Q9NQ69
LMX1A_HUMAN.H11MO.0.D HUMAN:LMX1A 19 D 0 YAATTAAWWnKnYWATTWn HOCOMOCOv10 HT-SELEX 23 HD-LIM factors{3.1.5} Lmx{3.1.5.6} 6653 4009 LMX1A_HUMAN Q8TE12
LMX1B_HUMAN.H11MO.0.D HUMAN:LMX1B 18 D 0 TAATTAAYWvvbWhWWWW HOCOMOCOv10 HT-SELEX 35 HD-LIM factors{3.1.5} Lmx{3.1.5.6} 6654 4010 LMX1B_HUMAN O60663
ISL1_HUMAN.H11DI.0.A HUMAN:ISL1 14 A 0 nnYTAAKKRvhYhn HOCOMOCOv11 ChIP-Seq 0.838 0.918 3 13 472 HD-LIM factors{3.1.5} ISL{3.1.5.1} 6132 3670 ISL1_HUMAN P61371
LHX2_HUMAN.H11DI.0.A HUMAN:LHX2 12 A 0 nYTAATKRbbhn HOCOMOCOv11 ChIP-Seq 0.831 0.938 5 12 501 HD-LIM factors{3.1.5} Lhx-2-like factors{3.1.5.3} 6594 9355 LHX2_HUMAN P50458
LHX6_HUMAN.H11DI.0.D HUMAN:LHX6 11 D 0 nbYTGATTRvn HOCOMOCOv11 ChIP-Seq 0.337 0.932 1 2 445 HD-LIM factors{3.1.5} Lhx-6-like factors{3.1.5.5} 21735 26468 LHX6_HUMAN Q9UPM6
ISL1_MOUSE.H11MO.0.A MOUSE:Isl1 9 A 0 vYWRAKKRv HOCOMOCOv11 ChIP-Seq 0.805 0.858 3 13 500 HD-LIM factors{3.1.5} ISL{3.1.5.1} 101791 16392 ISL1_MOUSE P61372
LHX2_MOUSE.H11MO.0.A MOUSE:Lhx2 10 A 0 nhTAATKAGn HOCOMOCOv11 ChIP-Seq 0.814 0.938 5 12 501 HD-LIM factors{3.1.5} Lhx-2-like factors{3.1.5.3} 96785 16870 LHX2_MOUSE Q9Z0S2
LHX3_MOUSE.H11MO.0.C MOUSE:Lhx3 9 C 0 nbTAATKRv HOCOMOCOv11 ChIP-Seq 0.94 2 500 HD-LIM factors{3.1.5} Lhx-3-like factors{3.1.5.4} 102673 16871 LHX3_MOUSE P50481
LHX6_MOUSE.H11MO.0.C MOUSE:Lhx6 9 C 0 nYTGATTRv HOCOMOCOv11 ChIP-Seq 0.517 0.946 1 2 241 HD-LIM factors{3.1.5} Lhx-6-like factors{3.1.5.5} 1306803 16874 LHX6_MOUSE Q9R1R0
ISL1_MOUSE.H11DI.0.A MOUSE:Isl1 14 A 0 nnYTAAKKRvhYhn HOCOMOCOv11 ChIP-Seq 0.838 0.918 3 13 472 HD-LIM factors{3.1.5} ISL{3.1.5.1} 101791 16392 ISL1_MOUSE P61372
LHX2_MOUSE.H11DI.0.A MOUSE:Lhx2 11 A 0 nhTAATKAGvn HOCOMOCOv11 ChIP-Seq 0.804 0.934 5 12 531 HD-LIM factors{3.1.5} Lhx-2-like factors{3.1.5.3} 96785 16870 LHX2_MOUSE Q9Z0S2
LHX3_MOUSE.H11DI.0.C MOUSE:Lhx3 14 C 0 hhdhnbTAATKRvd HOCOMOCOv11 ChIP-Seq 0.951 2 387 HD-LIM factors{3.1.5} Lhx-3-like factors{3.1.5.4} 102673 16871 LHX3_MOUSE P50481
LHX6_MOUSE.H11DI.0.C MOUSE:Lhx6 11 C 0 nbYTGATTRvn HOCOMOCOv11 ChIP-Seq 0.337 0.932 1 2 445 HD-LIM factors{3.1.5} Lhx-6-like factors{3.1.5.5} 1306803 16874 LHX6_MOUSE Q9R1R0