Check the newest release v13
PWMs for transcription factors
Model Transcription factor Model length Quality
 Model rank Consensus Model release Data source Best auROC (human) Best auROC (mouse) Peak sets in benchmark (human) Peak sets in benchmark (mouse) Aligned words TF family TF subfamily HGNC MGI EntrezGene UniProt ID UniProt AC
AHR_HUMAN.H11MO.0.B HUMAN:AHR 9 B 0 dKhGCGTGh HOCOMOCOv9 Integrative 157 PAS domain factors{1.2.5} Ahr-like factors{1.2.5.1} 348 196 AHR_HUMAN P35869
ARNT2_HUMAN.H11MO.0.D HUMAN:ARNT2 12 D 0 RnSGTGGvRSRS HOCOMOCOv9 Integrative 18 PAS domain factors{1.2.5} Arnt-like factors{1.2.5.2} 16876 9915 ARNT2_HUMAN Q9HBZ2
ARNT_HUMAN.H11MO.0.B HUMAN:ARNT 9 B 0 vdRCGTGMh HOCOMOCOv11 ChIP-Seq 0.936 8 500 PAS domain factors{1.2.5} Arnt-like factors{1.2.5.2} 700 405 ARNT_HUMAN P27540
BMAL1_HUMAN.H11MO.0.A HUMAN:ARNTL 11 A 0 nSCAYGTGhbb HOCOMOCOv11 ChIP-Seq 0.864 0.875 18 15 410 PAS domain factors{1.2.5} Arnt-like factors{1.2.5.2} 701 406 BMAL1_HUMAN O00327
CLOCK_HUMAN.H11MO.0.C HUMAN:CLOCK 14 C 0 SdvnCAMRYGvvvh HOCOMOCOv11 ChIP-Seq 0.658 0.735 5 22 253 PAS domain factors{1.2.5} Arnt-like factors{1.2.5.2} 2082 9575 CLOCK_HUMAN O15516
EPAS1_HUMAN.H11MO.0.B HUMAN:EPAS1 9 B 0 vdACGTGhh HOCOMOCOv11 ChIP-Seq 0.838 24 500 PAS domain factors{1.2.5} Ahr-like factors{1.2.5.1} 3374 2034 EPAS1_HUMAN Q99814
HIF1A_HUMAN.H11MO.0.C HUMAN:HIF1A 8 C 0 vdACGTGh HOCOMOCOv11 ChIP-Seq 0.762 0.738 39 8 501 PAS domain factors{1.2.5} Ahr-like factors{1.2.5.1} 4910 3091 HIF1A_HUMAN Q16665
ARNT_HUMAN.H11DI.0.B HUMAN:ARNT 12 B 0 nbnvdRCGTGMb HOCOMOCOv11 ChIP-Seq 0.952 8 512 PAS domain factors{1.2.5} Arnt-like factors{1.2.5.2} 700 405 ARNT_HUMAN P27540
BMAL1_HUMAN.H11DI.0.A HUMAN:ARNTL 18 A 0 bnbvnnnvdvCACGTGMb HOCOMOCOv11 ChIP-Seq 0.881 0.868 18 15 503 PAS domain factors{1.2.5} Arnt-like factors{1.2.5.2} 701 406 BMAL1_HUMAN O00327
EPAS1_HUMAN.H11DI.0.B HUMAN:EPAS1 12 B 0 vdCACGThbnhn HOCOMOCOv11 ChIP-Seq 0.892 24 503 PAS domain factors{1.2.5} Ahr-like factors{1.2.5.1} 3374 2034 EPAS1_HUMAN Q99814
HIF1A_HUMAN.H11DI.0.C HUMAN:HIF1A 11 C 0 bnvKRCGTGhb HOCOMOCOv11 ChIP-Seq 0.719 0.718 39 8 515 PAS domain factors{1.2.5} Ahr-like factors{1.2.5.1} 4910 3091 HIF1A_HUMAN Q16665
AHR_MOUSE.H11MO.0.B MOUSE:Ahr 9 B 0 dKhGCGTGh HOCOMOCOv9 Integrative 157 PAS domain factors{1.2.5} Ahr-like factors{1.2.5.1} 105043 11622 AHR_MOUSE P30561
ARNT2_MOUSE.H11MO.0.D MOUSE:Arnt2 12 D 0 RnSGTGGvRSRS HOCOMOCOv9 Integrative 18 PAS domain factors{1.2.5} Arnt-like factors{1.2.5.2} 107188 11864 ARNT2_MOUSE Q61324
ARNT_MOUSE.H11MO.0.B MOUSE:Arnt 8 B 0 bYACGTGh HOCOMOCOv9 Integrative 283 PAS domain factors{1.2.5} Arnt-like factors{1.2.5.2} 88071 11863 ARNT_MOUSE P53762
BMAL1_MOUSE.H11MO.0.A MOUSE:Arntl 9 A 0 MCACGTGMb HOCOMOCOv11 ChIP-Seq 0.866 0.88 18 15 501 PAS domain factors{1.2.5} Arnt-like factors{1.2.5.2} 1096381 11865 BMAL1_MOUSE Q9WTL8
CLOCK_MOUSE.H11MO.0.C MOUSE:Clock 14 C 0 SdvnCAMRYGvvvh HOCOMOCOv11 ChIP-Seq 0.658 0.735 5 22 253 PAS domain factors{1.2.5} Arnt-like factors{1.2.5.2} 99698 12753 CLOCK_MOUSE O08785
EPAS1_MOUSE.H11MO.0.C MOUSE:Epas1 9 C 0 vdACGTGhh HOCOMOCOv11 ChIP-Seq 0.838 24 500 PAS domain factors{1.2.5} Ahr-like factors{1.2.5.1} 109169 13819 EPAS1_MOUSE P97481
HIF1A_MOUSE.H11MO.0.C MOUSE:Hif1a 8 C 0 vdACGTGh HOCOMOCOv11 ChIP-Seq 0.762 0.738 39 8 501 PAS domain factors{1.2.5} Ahr-like factors{1.2.5.1} 106918 15251 HIF1A_MOUSE Q61221
BMAL1_MOUSE.H11DI.0.A MOUSE:Arntl 18 A 0 nnbbvbnnSCAYGTGhbn HOCOMOCOv11 ChIP-Seq 0.859 0.883 18 15 420 PAS domain factors{1.2.5} Arnt-like factors{1.2.5.2} 1096381 11865 BMAL1_MOUSE Q9WTL8
HIF1A_MOUSE.H11DI.0.C MOUSE:Hif1a 11 C 0 bnvKRCGTGhb HOCOMOCOv11 ChIP-Seq 0.719 0.718 39 8 515 PAS domain factors{1.2.5} Ahr-like factors{1.2.5.1} 106918 15251 HIF1A_MOUSE Q61221