Check the newest release v13
PWMs for transcription factors
Model Transcription factor Model length Quality
 Model rank Consensus Model release Data source Best auROC (human) Best auROC (mouse) Peak sets in benchmark (human) Peak sets in benchmark (mouse) Aligned words TF family TF subfamily HGNC MGI EntrezGene UniProt ID UniProt AC
ASCL1_HUMAN.H11MO.0.A HUMAN:ASCL1 14 A 0 hnvCASCTGYYbhh HOCOMOCOv11 ChIP-Seq 0.985 0.98 30 25 480 MyoD / ASC-related factors{1.2.2} Achaete-Scute-like factors{1.2.2.2} 738 429 ASCL1_HUMAN P50553
ASCL2_HUMAN.H11MO.0.D HUMAN:ASCL2 9 D 0 vCASCTGCY HOCOMOCOv11 ChIP-Seq 0.594 0.92 8 9 505 MyoD / ASC-related factors{1.2.2} Achaete-Scute-like factors{1.2.2.2} 739 430 ASCL2_HUMAN Q99929
MYF6_HUMAN.H11MO.0.C HUMAN:MYF6 7 C 0 CAGCTGC HOCOMOCOv9 Integrative 9 MyoD / ASC-related factors{1.2.2} Myogenic transcription factors{1.2.2.1} 7566 4618 MYF6_HUMAN P23409
MYOD1_HUMAN.H11MO.0.A HUMAN:MYOD1 15 A 0 vCAGCTGYYnYbbbh HOCOMOCOv11 ChIP-Seq 0.99 0.992 9 63 500 MyoD / ASC-related factors{1.2.2} Myogenic transcription factors{1.2.2.1} 7611 4654 MYOD1_HUMAN P15172
MYOD1_HUMAN.H11MO.1.A HUMAN:MYOD1 11 A 1 bnbCAGCTGTY HOCOMOCOv11 ChIP-Seq 0.984 0.988 9 63 500 MyoD / ASC-related factors{1.2.2} Myogenic transcription factors{1.2.2.1} 7611 4654 MYOD1_HUMAN P15172
MYOG_HUMAN.H11MO.0.B HUMAN:MYOG 13 B 0 bhvCAGCTGYYhb HOCOMOCOv11 ChIP-Seq 0.994 20 500 MyoD / ASC-related factors{1.2.2} Myogenic transcription factors{1.2.2.1} 7612 4656 MYOG_HUMAN P15173
ASCL1_HUMAN.H11DI.0.A HUMAN:ASCL1 16 A 0 nvhvCACCTGSYnbhn HOCOMOCOv11 ChIP-Seq 0.99 0.983 30 25 534 MyoD / ASC-related factors{1.2.2} Achaete-Scute-like factors{1.2.2.2} 738 429 ASCL1_HUMAN P50553
ASCL2_HUMAN.H11DI.0.D HUMAN:ASCL2 13 D 0 nvCASCTGCYnbn HOCOMOCOv11 ChIP-Seq 0.624 0.933 8 9 522 MyoD / ASC-related factors{1.2.2} Achaete-Scute-like factors{1.2.2.2} 739 430 ASCL2_HUMAN Q99929
MYOD1_HUMAN.H11DI.0.A HUMAN:MYOD1 18 A 0 vCASCTGYYnbbbbbnnb HOCOMOCOv11 ChIP-Seq 0.995 0.997 9 63 437 MyoD / ASC-related factors{1.2.2} Myogenic transcription factors{1.2.2.1} 7611 4654 MYOD1_HUMAN P15172
ASCL1_MOUSE.H11MO.0.A MOUSE:Ascl1 14 A 0 bhvCASCTGYYbbh HOCOMOCOv11 ChIP-Seq 0.977 0.99 30 25 447 MyoD / ASC-related factors{1.2.2} Achaete-Scute-like factors{1.2.2.2} 96919 17172 ASCL1_MOUSE Q02067
ASCL2_MOUSE.H11MO.0.C MOUSE:Ascl2 9 C 0 vCASCTGCY HOCOMOCOv11 ChIP-Seq 0.594 0.92 8 9 505 MyoD / ASC-related factors{1.2.2} Achaete-Scute-like factors{1.2.2.2} 96920 17173 ASCL2_MOUSE O35885
MYF5_MOUSE.H11MO.0.D MOUSE:Myf5 11 D 0 bCASCTGTYnh HOCOMOCOv11 ChIP-Seq 0.787 2 449 MyoD / ASC-related factors{1.2.2} Myogenic transcription factors{1.2.2.1} 97252 17877 MYF5_MOUSE P24699
MYF6_MOUSE.H11MO.0.C MOUSE:Myf6 7 C 0 CAGCTGC HOCOMOCOv9 Integrative 9 MyoD / ASC-related factors{1.2.2} Myogenic transcription factors{1.2.2.1} 97253 17878 MYF6_MOUSE P15375
MYOD1_MOUSE.H11MO.0.A MOUSE:Myod1 15 A 0 vCASCTGYYnYhvbb HOCOMOCOv11 ChIP-Seq 0.985 0.994 9 63 501 MyoD / ASC-related factors{1.2.2} Myogenic transcription factors{1.2.2.1} 97275 17927 MYOD1_MOUSE P10085
MYOD1_MOUSE.H11MO.1.A MOUSE:Myod1 11 A 1 vCAGCTGTYvY HOCOMOCOv11 ChIP-Seq 0.982 0.992 9 63 501 MyoD / ASC-related factors{1.2.2} Myogenic transcription factors{1.2.2.1} 97275 17927 MYOD1_MOUSE P10085
MYOG_MOUSE.H11MO.0.A MOUSE:Myog 13 A 0 bhvCAGCTGYYhb HOCOMOCOv11 ChIP-Seq 0.994 20 500 MyoD / ASC-related factors{1.2.2} Myogenic transcription factors{1.2.2.1} 97276 17928 MYOG_MOUSE P12979
ASCL1_MOUSE.H11DI.0.A MOUSE:Ascl1 14 A 0 nvCAGCTGCYbnbn HOCOMOCOv11 ChIP-Seq 0.976 0.993 30 25 342 MyoD / ASC-related factors{1.2.2} Achaete-Scute-like factors{1.2.2.2} 96919 17172 ASCL1_MOUSE Q02067
ASCL2_MOUSE.H11DI.0.C MOUSE:Ascl2 13 C 0 nvCASCTGCYnbn HOCOMOCOv11 ChIP-Seq 0.624 0.933 8 9 522 MyoD / ASC-related factors{1.2.2} Achaete-Scute-like factors{1.2.2.2} 96920 17173 ASCL2_MOUSE O35885
MYF5_MOUSE.H11DI.0.D MOUSE:Myf5 15 D 0 nvnvddRACAGSTGn HOCOMOCOv11 ChIP-Seq 0.798 2 448 MyoD / ASC-related factors{1.2.2} Myogenic transcription factors{1.2.2.1} 97252 17877 MYF5_MOUSE P24699
MYOD1_MOUSE.H11DI.0.A MOUSE:Myod1 23 A 0 nnnvCAGCTGYYbbhbbbnnbbn HOCOMOCOv10 ChIP-Seq 0.993 0.998 9 63 500 MyoD / ASC-related factors{1.2.2} Myogenic transcription factors{1.2.2.1} 97275 17927 MYOD1_MOUSE P10085
MYOG_MOUSE.H11DI.0.A MOUSE:Myog 22 A 0 nvvvvnRRCAGCTGbndnnnnn HOCOMOCOv10 ChIP-Seq 0.997 20 461 MyoD / ASC-related factors{1.2.2} Myogenic transcription factors{1.2.2.1} 97276 17928 MYOG_MOUSE P12979