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PWMs for transcription factors
Model Transcription factor Model length Quality
 Model rank Consensus Model release Data source Best auROC (human) Best auROC (mouse) Peak sets in benchmark (human) Peak sets in benchmark (mouse) Aligned words TF family TF subfamily HGNC MGI EntrezGene UniProt ID UniProt AC
ALX1_HUMAN.H11MO.0.B HUMAN:ALX1 12 B 0 vTRATYGnATTA HOCOMOCOv9 Integrative 33 Paired-related HD factors{3.1.3} ALX{3.1.3.1} 1494 8092 ALX1_HUMAN Q15699
ALX3_HUMAN.H11MO.0.D HUMAN:ALX3 11 D 0 TAATTARMTWW HOCOMOCOv10 HT-SELEX 8583 Paired-related HD factors{3.1.3} ALX{3.1.3.1} 449 257 ALX3_HUMAN O95076
ALX4_HUMAN.H11MO.0.D HUMAN:ALX4 12 D 0 hTAATTARATTA HOCOMOCOv10 HT-SELEX 23663 Paired-related HD factors{3.1.3} ALX{3.1.3.1} 450 60529 ALX4_HUMAN Q9H161
CRX_HUMAN.H11MO.0.B HUMAN:CRX 13 B 0 hvRdvGGATTAdv HOCOMOCOv11 ChIP-Seq 0.933 8 500 Paired-related HD factors{3.1.3} OTX{3.1.3.17} 2383 1406 CRX_HUMAN O43186
HESX1_HUMAN.H11MO.0.D HUMAN:HESX1 16 D 0 nKCYGRCWCnTRRnhY HOCOMOCOv9 Integrative 8 Paired-related HD factors{3.1.3} HESX{3.1.3.10} 4877 8820 HESX1_HUMAN Q9UBX0
ISX_HUMAN.H11MO.0.D HUMAN:ISX 16 D 0 bTAATTARnhhWhhdd HOCOMOCOv10 HT-SELEX 14859 Paired-related HD factors{3.1.3} ISX{3.1.3.12} 28084 91464 ISX_HUMAN Q2M1V0
MIXL1_HUMAN.H11MO.0.D HUMAN:MIXL1 11 D 0 vbTAATTvvdn HOCOMOCOv10 HT-SELEX 220 Paired-related HD factors{3.1.3} MIX{3.1.3.14} 13363 83881 MIXL1_HUMAN Q9H2W2
NOBOX_HUMAN.H11MO.0.C HUMAN:NOBOX 9 C 0 hTAATTGvb HOCOMOCOv9 Integrative 66 Paired-related HD factors{3.1.3} NOBOX{3.1.3.15} 22448 135935 NOBOX_HUMAN O60393
OTX1_HUMAN.H11MO.0.D HUMAN:OTX1 8 D 0 nGGATTAn HOCOMOCOv9 Integrative 8 Paired-related HD factors{3.1.3} OTX{3.1.3.17} 8521 5013 OTX1_HUMAN P32242
OTX2_HUMAN.H11MO.0.A HUMAN:OTX2 11 A 0 ddRGGATTAdv HOCOMOCOv11 ChIP-Seq 0.863 0.886 5 18 500 Paired-related HD factors{3.1.3} OTX{3.1.3.17} 8522 5015 OTX2_HUMAN P32243
PHX2A_HUMAN.H11MO.0.D HUMAN:PHOX2A 11 D 0 TAATYTAATTA HOCOMOCOv10 HT-SELEX 7919 Paired-related HD factors{3.1.3} PHOX{3.1.3.18} 691 401 PHX2A_HUMAN O14813
PHX2B_HUMAN.H11MO.0.D HUMAN:PHOX2B 11 D 0 WAATYTAATTA HOCOMOCOv10 HT-SELEX 24552 Paired-related HD factors{3.1.3} PHOX{3.1.3.18} 9143 8929 PHX2B_HUMAN Q99453
PITX1_HUMAN.H11MO.0.D HUMAN:PITX1 9 D 0 vRGGMTTWd HOCOMOCOv11 ChIP-Seq 0.544 0.885 2 4 500 Paired-related HD factors{3.1.3} PITX{3.1.3.19} 9004 5307 PITX1_HUMAN P78337
PITX2_HUMAN.H11MO.0.D HUMAN:PITX2 10 D 0 YKGGATTWvh HOCOMOCOv9 Integrative 17 Paired-related HD factors{3.1.3} PITX{3.1.3.19} 9005 5308 PITX2_HUMAN Q99697
PITX3_HUMAN.H11MO.0.D HUMAN:PITX3 18 D 0 dddRdWWhvdvGGATTAd HOCOMOCOv10 HT-SELEX 7586 Paired-related HD factors{3.1.3} PITX{3.1.3.19} 9006 5309 PITX3_HUMAN O75364
OTX2_HUMAN.H11DI.0.A HUMAN:OTX2 14 A 0 ndddRGGATTAdvn HOCOMOCOv11 ChIP-Seq 0.879 0.92 5 18 500 Paired-related HD factors{3.1.3} OTX{3.1.3.17} 8522 5015 OTX2_HUMAN P32243
PITX1_HUMAN.H11DI.0.D HUMAN:PITX1 10 D 0 ndGGMTTWdn HOCOMOCOv11 ChIP-Seq 0.546 0.884 2 4 500 Paired-related HD factors{3.1.3} PITX{3.1.3.19} 9004 5307 PITX1_HUMAN P78337
ALX1_MOUSE.H11MO.0.B MOUSE:Alx1 12 B 0 vTRATYGnATTA HOCOMOCOv9 Integrative 33 Paired-related HD factors{3.1.3} ALX{3.1.3.1} 104621 216285 ALX1_MOUSE Q8C8B0
CRX_MOUSE.H11MO.0.A MOUSE:Crx 13 A 0 hvRdvGGATTAdv HOCOMOCOv11 ChIP-Seq 0.933 8 500 Paired-related HD factors{3.1.3} OTX{3.1.3.17} 1194883 12951 CRX_MOUSE O54751
HESX1_MOUSE.H11MO.0.D MOUSE:Hesx1 16 D 0 nKCYGRCWCnTRRnhY HOCOMOCOv9 Integrative 8 Paired-related HD factors{3.1.3} HESX{3.1.3.10} 96071 15209 HESX1_MOUSE Q61658
OTX1_MOUSE.H11MO.0.D MOUSE:Otx1 8 D 0 nGGATTAn HOCOMOCOv9 Integrative 8 Paired-related HD factors{3.1.3} OTX{3.1.3.17} 97450 18423 OTX1_MOUSE P80205
OTX2_MOUSE.H11MO.0.A MOUSE:Otx2 12 A 0 dvddRGGATTAd HOCOMOCOv11 ChIP-Seq 0.847 0.904 5 18 500 Paired-related HD factors{3.1.3} OTX{3.1.3.17} 97451 OTX2_MOUSE P80206
PITX1_MOUSE.H11MO.0.C MOUSE:Pitx1 10 C 0 dRGGATTAdv HOCOMOCOv11 ChIP-Seq 0.529 0.875 2 4 196 Paired-related HD factors{3.1.3} PITX{3.1.3.19} 107374 18740 PITX1_MOUSE P70314
PITX2_MOUSE.H11MO.0.D MOUSE:Pitx2 10 D 0 YKGGATTWvh HOCOMOCOv9 Integrative 17 Paired-related HD factors{3.1.3} PITX{3.1.3.19} 109340 18741 PITX2_MOUSE P97474
CRX_MOUSE.H11DI.0.A MOUSE:Crx 13 A 0 nvddvRGATTAdn HOCOMOCOv11 ChIP-Seq 0.946 8 501 Paired-related HD factors{3.1.3} OTX{3.1.3.17} 1194883 12951 CRX_MOUSE O54751
OTX2_MOUSE.H11DI.0.A MOUSE:Otx2 14 A 0 ndddRGGATTAdvn HOCOMOCOv11 ChIP-Seq 0.879 0.92 5 18 500 Paired-related HD factors{3.1.3} OTX{3.1.3.17} 97451 OTX2_MOUSE P80206
PITX1_MOUSE.H11DI.0.C MOUSE:Pitx1 11 C 0 nvdGGMTTAdn HOCOMOCOv11 ChIP-Seq 0.523 0.887 2 4 390 Paired-related HD factors{3.1.3} PITX{3.1.3.19} 107374 18740 PITX1_MOUSE P70314