Check the newest release v13
PWMs for transcription factors
Model Transcription factor Model length Quality
 Model rank Consensus Model release Data source Best auROC (human) Best auROC (mouse) Peak sets in benchmark (human) Peak sets in benchmark (mouse) Aligned words TF family TF subfamily HGNC MGI EntrezGene UniProt ID UniProt AC
IRX2_HUMAN.H11MO.0.D HUMAN:IRX2 19 D 0 vbdbKdndKKdYRTGKdvd HOCOMOCOv10 HT-SELEX 19310 TALE-type homeo domain factors{3.1.4} IRX (Iroquois){3.1.4.1} 14359 153572 IRX2_HUMAN Q9BZI1
IRX3_HUMAN.H11MO.0.D HUMAN:IRX3 11 D 0 hndYWTGTWhd HOCOMOCOv10 HT-SELEX 383 TALE-type homeo domain factors{3.1.4} IRX (Iroquois){3.1.4.1} 14360 79191 IRX3_HUMAN P78415
MEIS1_HUMAN.H11MO.0.A HUMAN:MEIS1 12 A 0 dTGATWdATddb HOCOMOCOv11 ChIP-Seq 0.816 0.945 2 37 499 TALE-type homeo domain factors{3.1.4} MEIS{3.1.4.2} 7000 4211 MEIS1_HUMAN O00470
MEIS1_HUMAN.H11MO.1.B HUMAN:MEIS1 9 B 1 dhTGACARv HOCOMOCOv11 ChIP-Seq 0.778 0.854 2 37 500 TALE-type homeo domain factors{3.1.4} MEIS{3.1.4.2} 7000 4211 MEIS1_HUMAN O00470
MEIS2_HUMAN.H11MO.0.B HUMAN:MEIS2 13 B 0 hTGACAGbTKTbv HOCOMOCOv9 Integrative 413 TALE-type homeo domain factors{3.1.4} MEIS{3.1.4.2} 7001 4212 MEIS2_HUMAN O14770
MEIS3_HUMAN.H11MO.0.D HUMAN:MEIS3 11 D 0 ndTGACAKvYd HOCOMOCOv10 HT-SELEX 10453 TALE-type homeo domain factors{3.1.4} MEIS{3.1.4.2} 29537 56917 MEIS3_HUMAN Q99687
PBX1_HUMAN.H11MO.0.A HUMAN:PBX1 10 A 0 dGAbKGACRR HOCOMOCOv11 ChIP-Seq 0.936 0.883 2 36 501 TALE-type homeo domain factors{3.1.4} PBX{3.1.4.4} 8632 5087 PBX1_HUMAN P40424
PBX1_HUMAN.H11MO.1.C HUMAN:PBX1 15 C 1 ddhWWGATKGATbdb HOCOMOCOv9 Integrative 0.733 0.759 2 36 145 TALE-type homeo domain factors{3.1.4} PBX{3.1.4.4} 8632 5087 PBX1_HUMAN P40424
PBX2_HUMAN.H11MO.0.C HUMAN:PBX2 15 C 0 KvMhKTGATTGWWKb HOCOMOCOv9 Integrative 19 TALE-type homeo domain factors{3.1.4} PBX{3.1.4.4} 8633 5089 PBX2_HUMAN P40425
PBX3_HUMAN.H11MO.0.A HUMAN:PBX3 11 A 0 WGAbdGRCRKb HOCOMOCOv11 ChIP-Seq 0.941 17 420 TALE-type homeo domain factors{3.1.4} PBX{3.1.4.4} 8634 5090 PBX3_HUMAN P40426
PBX3_HUMAN.H11MO.1.A HUMAN:PBX3 9 A 1 YSAKTGGCh HOCOMOCOv11 ChIP-Seq 0.922 17 500 TALE-type homeo domain factors{3.1.4} PBX{3.1.4.4} 8634 5090 PBX3_HUMAN P40426
PKNX1_HUMAN.H11MO.0.B HUMAN:PKNOX1 11 B 0 WGAbKGRCRSv HOCOMOCOv11 ChIP-Seq 0.967 19 480 TALE-type homeo domain factors{3.1.4} PKNOX{3.1.4.5} 9022 5316 PKNX1_HUMAN P55347
TF2LX_HUMAN.H11MO.0.D HUMAN:TGIF2LX 15 D 0 RYhnTdACAKCTnTC HOCOMOCOv10 HT-SELEX 14 TALE-type homeo domain factors{3.1.4} TGIF{3.1.4.6} 18570 90316 TF2LX_HUMAN Q8IUE1
TGIF1_HUMAN.H11MO.0.A HUMAN:TGIF1 7 A 0 WGACAGb HOCOMOCOv11 ChIP-Seq 0.861 0.976 2 5 500 TALE-type homeo domain factors{3.1.4} TGIF{3.1.4.6} 11776 7050 TGIF1_HUMAN Q15583
TGIF2_HUMAN.H11MO.0.D HUMAN:TGIF2 11 D 0 nTGACASvYRY HOCOMOCOv10 HT-SELEX 46893 TALE-type homeo domain factors{3.1.4} TGIF{3.1.4.6} 15764 60436 TGIF2_HUMAN Q9GZN2
MEIS1_HUMAN.H11DI.0.A HUMAN:MEIS1 14 A 0 ndTGAYTdATKdbn HOCOMOCOv11 ChIP-Seq 0.848 0.952 2 37 500 TALE-type homeo domain factors{3.1.4} MEIS{3.1.4.2} 7000 4211 MEIS1_HUMAN O00470
PBX1_HUMAN.H11DI.0.A HUMAN:PBX1 12 A 0 nWGAbWGRCARv HOCOMOCOv11 ChIP-Seq 0.94 0.873 2 36 527 TALE-type homeo domain factors{3.1.4} PBX{3.1.4.4} 8632 5087 PBX1_HUMAN P40424
PBX3_HUMAN.H11DI.0.A HUMAN:PBX3 23 A 0 dGAbdGRCRKbnvnnnnvvSSMv HOCOMOCOv10 ChIP-Seq 0.98 17 504 TALE-type homeo domain factors{3.1.4} PBX{3.1.4.4} 8634 5090 PBX3_HUMAN P40426
TGIF1_HUMAN.H11DI.0.A HUMAN:TGIF1 11 A 0 nTGACAGSnvn HOCOMOCOv11 ChIP-Seq 0.812 0.981 2 5 142 TALE-type homeo domain factors{3.1.4} TGIF{3.1.4.6} 11776 7050 TGIF1_HUMAN Q15583
MEIS1_MOUSE.H11MO.0.A MOUSE:Meis1 12 A 0 dTGATWdATddb HOCOMOCOv11 ChIP-Seq 0.816 0.945 2 37 499 TALE-type homeo domain factors{3.1.4} MEIS{3.1.4.2} 104717 17268 MEIS1_MOUSE Q60954
MEIS1_MOUSE.H11MO.1.A MOUSE:Meis1 12 A 1 bWShTGACAKvh HOCOMOCOv11 ChIP-Seq 0.708 0.891 2 37 500 TALE-type homeo domain factors{3.1.4} MEIS{3.1.4.2} 104717 17268 MEIS1_MOUSE Q60954
MEIS2_MOUSE.H11MO.0.B MOUSE:Meis2 13 B 0 hTGACAGbTKTbv HOCOMOCOv9 Integrative 413 TALE-type homeo domain factors{3.1.4} MEIS{3.1.4.2} 108564 17536 MEIS2_MOUSE P97367
PBX1_MOUSE.H11MO.0.A MOUSE:Pbx1 11 A 0 WGAKTGRCRKv HOCOMOCOv11 ChIP-Seq 0.858 0.902 2 36 500 TALE-type homeo domain factors{3.1.4} PBX{3.1.4.4} 97495 18514 PBX1_MOUSE P41778
PBX1_MOUSE.H11MO.1.A MOUSE:Pbx1 13 A 1 bbbYSATTGGYhd HOCOMOCOv11 ChIP-Seq 0.876 0.915 2 36 500 TALE-type homeo domain factors{3.1.4} PBX{3.1.4.4} 97495 18514 PBX1_MOUSE P41778
PBX1_MOUSE.H11MO.2.C MOUSE:Pbx1 15 C 2 ddhWWGATKGATbdb HOCOMOCOv9 Integrative 0.733 0.759 2 36 145 TALE-type homeo domain factors{3.1.4} PBX{3.1.4.4} 97495 18514 PBX1_MOUSE P41778
PBX2_MOUSE.H11MO.0.C MOUSE:Pbx2 15 C 0 KvMhKTGATTGWWKb HOCOMOCOv9 Integrative 19 TALE-type homeo domain factors{3.1.4} PBX{3.1.4.4} 1341793 18515 PBX2_MOUSE O35984
PBX3_MOUSE.H11MO.0.A MOUSE:Pbx3 14 A 0 bbbYSATTGGYddv HOCOMOCOv9 Integrative 1885 TALE-type homeo domain factors{3.1.4} PBX{3.1.4.4} 97496 18516 PBX3_MOUSE O35317
PKNX1_MOUSE.H11MO.0.A MOUSE:Pknox1 11 A 0 WGAbKGRCRSv HOCOMOCOv11 ChIP-Seq 0.967 19 480 TALE-type homeo domain factors{3.1.4} PKNOX{3.1.4.5} 1201409 18771 PKNX1_MOUSE O70477
TGIF1_MOUSE.H11MO.0.A MOUSE:Tgif1 9 A 0 TGACAGSdv HOCOMOCOv11 ChIP-Seq 0.786 0.979 2 5 137 TALE-type homeo domain factors{3.1.4} TGIF{3.1.4.6} 1194497 21815 TGIF1_MOUSE P70284
MEIS1_MOUSE.H11DI.0.A MOUSE:Meis1 14 A 0 ndTGAYTdATKdbn HOCOMOCOv11 ChIP-Seq 0.848 0.952 2 37 500 TALE-type homeo domain factors{3.1.4} MEIS{3.1.4.2} 104717 17268 MEIS1_MOUSE Q60954
PBX1_MOUSE.H11DI.0.A MOUSE:Pbx1 12 A 0 nWGAYKGRYRRv HOCOMOCOv11 ChIP-Seq 0.851 0.915 2 36 508 TALE-type homeo domain factors{3.1.4} PBX{3.1.4.4} 97495 18514 PBX1_MOUSE P41778
PKNX1_MOUSE.H11DI.0.A MOUSE:Pknox1 12 A 0 bWGAbKGRCRKv HOCOMOCOv11 ChIP-Seq 0.973 19 479 TALE-type homeo domain factors{3.1.4} PKNOX{3.1.4.5} 1201409 18771 PKNX1_MOUSE O70477
TGIF1_MOUSE.H11DI.0.A MOUSE:Tgif1 11 A 0 nTGACAGSnvn HOCOMOCOv11 ChIP-Seq 0.812 0.981 2 5 142 TALE-type homeo domain factors{3.1.4} TGIF{3.1.4.6} 1194497 21815 TGIF1_MOUSE P70284