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PWMs for transcription factors
Model Transcription factor Model length Quality
 Model rank Consensus Model release Data source Best auROC (human) Best auROC (mouse) Peak sets in benchmark (human) Peak sets in benchmark (mouse) Aligned words TF family TF subfamily HGNC MGI EntrezGene UniProt ID UniProt AC
COT1_HUMAN.H11MO.0.C HUMAN:NR2F1 17 C 0 vRRRbvRRAGGKCAdvv HOCOMOCOv11 ChIP-Seq 0.879 3 501 RXR-related receptors (NR2){2.1.3} COUP-like receptors (NR2F){2.1.3.5} 7975 7025 COT1_HUMAN P10589
COT1_HUMAN.H11MO.1.C HUMAN:NR2F1 13 C 1 bvdRAGGKCAvvR HOCOMOCOv11 ChIP-Seq 0.851 3 478 RXR-related receptors (NR2){2.1.3} COUP-like receptors (NR2F){2.1.3.5} 7975 7025 COT1_HUMAN P10589
COT2_HUMAN.H11MO.0.A HUMAN:NR2F2 13 A 0 vMRAGGTCAdvdd HOCOMOCOv10 ChIP-Seq 0.934 0.833 28 3 509 RXR-related receptors (NR2){2.1.3} COUP-like receptors (NR2F){2.1.3.5} 7976 7026 COT2_HUMAN P24468
COT2_HUMAN.H11MO.1.A HUMAN:NR2F2 17 A 1 dRdvbhWRAGGKCAvvv HOCOMOCOv11 ChIP-Seq 0.915 0.732 28 3 503 RXR-related receptors (NR2){2.1.3} COUP-like receptors (NR2F){2.1.3.5} 7976 7026 COT2_HUMAN P24468
HNF4A_HUMAN.H11MO.0.A HUMAN:HNF4A 14 A 0 vRGdnCAAAGTYCR HOCOMOCOv11 ChIP-Seq 0.985 0.981 49 33 500 RXR-related receptors (NR2){2.1.3} HNF-4 (NR2A){2.1.3.2} 5024 3172 HNF4A_HUMAN P41235
HNF4G_HUMAN.H11MO.0.B HUMAN:HNF4G 14 B 0 vRGdnCAAAGKbCR HOCOMOCOv11 ChIP-Seq 0.983 6 500 RXR-related receptors (NR2){2.1.3} HNF-4 (NR2A){2.1.3.2} 5026 3174 HNF4G_HUMAN Q14541
NR2C1_HUMAN.H11MO.0.C HUMAN:NR2C1 13 C 0 RbYvARAGGTCAn HOCOMOCOv9 Integrative 19 RXR-related receptors (NR2){2.1.3} Testicular receptors (NR2C){2.1.3.4} 7971 7181 NR2C1_HUMAN P13056
NR2C2_HUMAN.H11MO.0.B HUMAN:NR2C2 12 B 0 RbTYMSGGGKCR HOCOMOCOv11 ChIP-Seq 0.844 35 502 RXR-related receptors (NR2){2.1.3} Testicular receptors (NR2C){2.1.3.4} 7972 7182 NR2C2_HUMAN P49116
NR2E1_HUMAN.H11MO.0.D HUMAN:NR2E1 17 D 0 MARKCAAdAAGTCAWbh HOCOMOCOv10 HT-SELEX 70 RXR-related receptors (NR2){2.1.3} Tailless-like receptors (NR2E){2.1.3.3} 7973 7101 NR2E1_HUMAN Q9Y466
NR2E3_HUMAN.H11MO.0.C HUMAN:NR2E3 14 C 0 nAAKTCAAAARKMM HOCOMOCOv9 Integrative 23 RXR-related receptors (NR2){2.1.3} Tailless-like receptors (NR2E){2.1.3.3} 7974 10002 NR2E3_HUMAN Q9Y5X4
NR2F6_HUMAN.H11MO.0.D HUMAN:NR2F6 18 D 0 RGSWMAAAGdnSAnnKdR HOCOMOCOv9 Integrative 11 RXR-related receptors (NR2){2.1.3} COUP-like receptors (NR2F){2.1.3.5} 7977 2063 NR2F6_HUMAN P10588
RXRA_HUMAN.H11MO.0.A HUMAN:RXRA 20 A 0 vdRdvddnvRRRGGKSAvdv HOCOMOCOv11 ChIP-Seq 0.867 0.916 52 158 500 RXR-related receptors (NR2){2.1.3} Retinoid X receptors (NR2B){2.1.3.1} 10477 6256 RXRA_HUMAN P19793
RXRA_HUMAN.H11MO.1.A HUMAN:RXRA 10 A 1 vhRAGGTCAb HOCOMOCOv11 ChIP-Seq 0.861 0.905 52 158 500 RXR-related receptors (NR2){2.1.3} Retinoid X receptors (NR2B){2.1.3.1} 10477 6256 RXRA_HUMAN P19793
RXRB_HUMAN.H11MO.0.C HUMAN:RXRB 10 C 0 WSAGGTCAbd HOCOMOCOv9 Integrative 30 RXR-related receptors (NR2){2.1.3} Retinoid X receptors (NR2B){2.1.3.1} 10478 6257 RXRB_HUMAN P28702
RXRG_HUMAN.H11MO.0.B HUMAN:RXRG 13 B 0 bGTCAAAGGTCAh HOCOMOCOv9 Integrative 584 RXR-related receptors (NR2){2.1.3} Retinoid X receptors (NR2B){2.1.3.1} 10479 6258 RXRG_HUMAN P48443
COT1_HUMAN.H11DI.0.C HUMAN:NR2F1 17 C 0 vdRdbbRRAGGTCAvvv HOCOMOCOv11 ChIP-Seq 0.868 3 489 RXR-related receptors (NR2){2.1.3} COUP-like receptors (NR2F){2.1.3.5} 7975 7025 COT1_HUMAN P10589
COT2_HUMAN.H11DI.0.A HUMAN:NR2F2 18 A 0 nddbnvMRAGGTCAvvdn HOCOMOCOv11 ChIP-Seq 0.948 0.834 28 3 505 RXR-related receptors (NR2){2.1.3} COUP-like receptors (NR2F){2.1.3.5} 7976 7026 COT2_HUMAN P24468
HNF4A_HUMAN.H11DI.0.A HUMAN:HNF4A 16 A 0 nvRGdnCAAAGTYCWn HOCOMOCOv11 ChIP-Seq 0.988 0.987 49 33 504 RXR-related receptors (NR2){2.1.3} HNF-4 (NR2A){2.1.3.2} 5024 3172 HNF4A_HUMAN P41235
HNF4G_HUMAN.H11DI.0.B HUMAN:HNF4G 15 B 0 vRGdnCAAAGKYCRn HOCOMOCOv11 ChIP-Seq 0.987 6 507 RXR-related receptors (NR2){2.1.3} HNF-4 (NR2A){2.1.3.2} 5026 3174 HNF4G_HUMAN Q14541
NR2C2_HUMAN.H11DI.0.A HUMAN:NR2C2 16 A 0 dbnRbTYMMGGGKYRv HOCOMOCOv11 ChIP-Seq 0.885 35 556 RXR-related receptors (NR2){2.1.3} Testicular receptors (NR2C){2.1.3.4} 7972 7182 NR2C2_HUMAN P49116
RXRA_HUMAN.H11DI.0.A HUMAN:RXRA 25 A 0 nvdnndnnddvnSWRAGGKCAnnbn HOCOMOCOv11 ChIP-Seq 0.9 0.928 52 158 500 RXR-related receptors (NR2){2.1.3} Retinoid X receptors (NR2B){2.1.3.1} 10477 6256 RXRA_HUMAN P19793
COT1_MOUSE.H11MO.0.B MOUSE:Nr2f1 9 B 0 YWRAGGTCA HOCOMOCOv9 Integrative 86 RXR-related receptors (NR2){2.1.3} COUP-like receptors (NR2F){2.1.3.5} 1352451 13865 COT1_MOUSE Q60632
COT1_MOUSE.H11MO.1.C MOUSE:Nr2f1 12 C 1 SdbYWRAGKTCA HOCOMOCOv9 Integrative 84 RXR-related receptors (NR2){2.1.3} COUP-like receptors (NR2F){2.1.3.5} 1352451 13865 COT1_MOUSE Q60632
COT2_MOUSE.H11MO.0.A MOUSE:Nr2f2 13 A 0 nhhRAGGTCAvvd HOCOMOCOv11 ChIP-Seq 0.931 0.846 28 3 500 RXR-related receptors (NR2){2.1.3} COUP-like receptors (NR2F){2.1.3.5} 1352452 11819 COT2_MOUSE P43135
COT2_MOUSE.H11MO.1.B MOUSE:Nr2f2 15 B 1 vRGKbCAdRGRKYvv HOCOMOCOv9 Integrative 0.9 0.758 28 3 82 RXR-related receptors (NR2){2.1.3} COUP-like receptors (NR2F){2.1.3.5} 1352452 11819 COT2_MOUSE P43135
COT2_MOUSE.H11MO.2.B MOUSE:Nr2f2 17 B 2 dRdvbhWRAGGKCAvvv HOCOMOCOv11 ChIP-Seq 0.915 0.732 28 3 503 RXR-related receptors (NR2){2.1.3} COUP-like receptors (NR2F){2.1.3.5} 1352452 11819 COT2_MOUSE P43135
HNF4A_MOUSE.H11MO.0.A MOUSE:Hnf4a 14 A 0 vdRdbCAAAGTYCR HOCOMOCOv11 ChIP-Seq 0.983 0.982 49 33 500 RXR-related receptors (NR2){2.1.3} HNF-4 (NR2A){2.1.3.2} 109128 15378 HNF4A_MOUSE P49698
HNF4G_MOUSE.H11MO.0.C MOUSE:Hnf4g 14 C 0 vRGdnCAAAGKbCR HOCOMOCOv11 ChIP-Seq 0.983 6 500 RXR-related receptors (NR2){2.1.3} HNF-4 (NR2A){2.1.3.2} 1353604 30942 HNF4G_MOUSE Q9WUU6
NR2C1_MOUSE.H11MO.0.C MOUSE:Nr2c1 13 C 0 RbYvARAGGTCAn HOCOMOCOv9 Integrative 19 RXR-related receptors (NR2){2.1.3} Testicular receptors (NR2C){2.1.3.4} 1352465 22025 NR2C1_MOUSE Q505F1
NR2C2_MOUSE.H11MO.0.A MOUSE:Nr2c2 13 A 0 RRSbSARAGGKMR HOCOMOCOv9 Integrative 2062 RXR-related receptors (NR2){2.1.3} Testicular receptors (NR2C){2.1.3.4} 1352466 22026 NR2C2_MOUSE P49117
NR2E3_MOUSE.H11MO.0.C MOUSE:Nr2e3 14 C 0 nAAKTCAAAARKMM HOCOMOCOv9 Integrative 23 RXR-related receptors (NR2){2.1.3} Tailless-like receptors (NR2E){2.1.3.3} 1346317 23958 NR2E3_MOUSE Q9QXZ7
NR2F6_MOUSE.H11MO.0.D MOUSE:Nr2f6 18 D 0 RGSWMAAAGdnSAnnKdR HOCOMOCOv9 Integrative 11 RXR-related receptors (NR2){2.1.3} COUP-like receptors (NR2F){2.1.3.5} 1352453 13864 NR2F6_MOUSE P43136
RXRA_MOUSE.H11MO.0.A MOUSE:Rxra 21 A 0 ddvdbvvdRAGKTCARGGbYR HOCOMOCOv11 ChIP-Seq 0.782 0.943 52 158 499 RXR-related receptors (NR2){2.1.3} Retinoid X receptors (NR2B){2.1.3.1} 98214 20181 RXRA_MOUSE P28700
RXRA_MOUSE.H11MO.1.A MOUSE:Rxra 22 A 1 vdddvdbvvdRAGKTCAvRRhb HOCOMOCOv11 ChIP-Seq 0.734 0.97 52 158 500 RXR-related receptors (NR2){2.1.3} Retinoid X receptors (NR2B){2.1.3.1} 98214 20181 RXRA_MOUSE P28700
RXRA_MOUSE.H11MO.2.A MOUSE:Rxra 10 A 2 RRGGTCAdRR HOCOMOCOv11 ChIP-Seq 0.784 0.963 52 158 365 RXR-related receptors (NR2){2.1.3} Retinoid X receptors (NR2B){2.1.3.1} 98214 20181 RXRA_MOUSE P28700
RXRB_MOUSE.H11MO.0.C MOUSE:Rxrb 10 C 0 WSAGGTCAbd HOCOMOCOv9 Integrative 30 RXR-related receptors (NR2){2.1.3} Retinoid X receptors (NR2B){2.1.3.1} 98215 20182 RXRB_MOUSE P28704
RXRG_MOUSE.H11MO.0.B MOUSE:Rxrg 22 B 0 vddvdbbvdRAGKTCAAGGYYW HOCOMOCOv11 ChIP-Seq 0.952 7 281 RXR-related receptors (NR2){2.1.3} Retinoid X receptors (NR2B){2.1.3.1} 98216 20183 RXRG_MOUSE P28705
RXRG_MOUSE.H11MO.1.B MOUSE:Rxrg 10 B 1 RAGKTCARRS HOCOMOCOv11 ChIP-Seq 0.946 7 501 RXR-related receptors (NR2){2.1.3} Retinoid X receptors (NR2B){2.1.3.1} 98216 20183 RXRG_MOUSE P28705
COT2_MOUSE.H11DI.0.A MOUSE:Nr2f2 19 A 0 nnddnnnhhvAGGTCAdvn HOCOMOCOv10 ChIP-Seq 0.95 0.874 28 3 501 RXR-related receptors (NR2){2.1.3} COUP-like receptors (NR2F){2.1.3.5} 1352452 11819 COT2_MOUSE P43135
HNF4A_MOUSE.H11DI.0.A MOUSE:Hnf4a 17 A 0 hhvRRdbCARAGKbCWn HOCOMOCOv11 ChIP-Seq 0.987 0.988 49 33 386 RXR-related receptors (NR2){2.1.3} HNF-4 (NR2A){2.1.3.2} 109128 15378 HNF4A_MOUSE P49698
RXRA_MOUSE.H11DI.0.A MOUSE:Rxra 25 A 0 dRRddvddbvdvAGKTCAvRRhvdn HOCOMOCOv11 ChIP-Seq 0.772 0.988 52 158 503 RXR-related receptors (NR2){2.1.3} Retinoid X receptors (NR2B){2.1.3.1} 98214 20181 RXRA_MOUSE P28700
RXRG_MOUSE.H11DI.0.A MOUSE:Rxrg 25 A 0 dvddvdbnnnRRGKKSARGGYYRnv HOCOMOCOv11 ChIP-Seq 0.986 7 395 RXR-related receptors (NR2){2.1.3} Retinoid X receptors (NR2B){2.1.3.1} 98216 20183 RXRG_MOUSE P28705