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PWMs for transcription factors
Model Transcription factor Model length Quality
 Model rank Consensus Model release Data source Best auROC (human) Best auROC (mouse) Peak sets in benchmark (human) Peak sets in benchmark (mouse) Aligned words TF family TF subfamily HGNC MGI EntrezGene UniProt ID UniProt AC
HMBX1_HUMAN.H11MO.0.D HUMAN:HMBOX1 9 D 0 dRYTRGTbA HOCOMOCOv11 ChIP-Seq 0.76 7 500 POU domain factors{3.1.10} HNF1-like factors{3.1.10.7} 26137 79618 HMBX1_HUMAN Q6NT76
HNF1A_HUMAN.H11MO.0.C HUMAN:HNF1A 15 C 0 dRKWAATGWTTWRYh HOCOMOCOv11 ChIP-Seq 0.927 3 500 POU domain factors{3.1.10} HNF1-like factors{3.1.10.7} 11621 6927 HNF1A_HUMAN P20823
HNF1B_HUMAN.H11MO.0.A HUMAN:HNF1B 15 A 0 dRTWAATGATTRMYh HOCOMOCOv11 ChIP-Seq 0.95 0.994 5 8 500 POU domain factors{3.1.10} HNF1-like factors{3.1.10.7} 11630 6928 HNF1B_HUMAN P35680
HNF1B_HUMAN.H11MO.1.A HUMAN:HNF1B 11 A 1 dGTTAATnATT HOCOMOCOv11 ChIP-Seq 0.916 0.993 5 8 500 POU domain factors{3.1.10} HNF1-like factors{3.1.10.7} 11630 6928 HNF1B_HUMAN P35680
P5F1B_HUMAN.H11MO.0.D HUMAN:POU5F1B 16 D 0 dvWTTTGCATAWKYWd HOCOMOCOv10 HT-SELEX 664 POU domain factors{3.1.10} POU5 (Oct-3/4-like factors){3.1.10.5} 9223 5462 P5F1B_HUMAN Q06416
PIT1_HUMAN.H11MO.0.C HUMAN:POU1F1 13 C 0 bWMWTGvAWATWh HOCOMOCOv9 Integrative 39 POU domain factors{3.1.10} POU1 (Pit-1-like factors){3.1.10.1} 9210 5449 PIT1_HUMAN P28069
PO2F1_HUMAN.H11MO.0.C HUMAN:POU2F1 16 C 0 RnKbvhATGSAAWhRh HOCOMOCOv11 ChIP-Seq 0.766 0.669 15 14 134 POU domain factors{3.1.10} POU2 (Oct-1/2-like factors){3.1.10.2} 9212 5451 PO2F1_HUMAN P14859
PO2F2_HUMAN.H11MO.0.A HUMAN:POU2F2 11 A 0 dhATGCAWAKd HOCOMOCOv11 ChIP-Seq 0.919 14 501 POU domain factors{3.1.10} POU2 (Oct-1/2-like factors){3.1.10.2} 9213 5452 PO2F2_HUMAN P09086
PO2F3_HUMAN.H11MO.0.D HUMAN:POU2F3 14 D 0 dWYAYGCWWRWdhd HOCOMOCOv10 HT-SELEX 301 POU domain factors{3.1.10} POU2 (Oct-1/2-like factors){3.1.10.2} 19864 25833 PO2F3_HUMAN Q9UKI9
PO3F1_HUMAN.H11MO.0.C HUMAN:POU3F1 14 C 0 vRTKSTWATGCWWd HOCOMOCOv9 Integrative 16 POU domain factors{3.1.10} POU3 (Oct-6-like factors){3.1.10.3} 9214 5453 PO3F1_HUMAN Q03052
PO3F2_HUMAN.H11MO.0.A HUMAN:POU3F2 17 A 0 YhCATKMMWWWbYMWdv HOCOMOCOv11 ChIP-Seq 0.924 0.913 12 22 507 POU domain factors{3.1.10} POU3 (Oct-6-like factors){3.1.10.3} 9215 5454 PO3F2_HUMAN P20265
PO3F3_HUMAN.H11MO.0.D HUMAN:POU3F3 17 D 0 hhWWWWWATKYWWWWdn HOCOMOCOv10 HT-SELEX 1347 POU domain factors{3.1.10} POU3 (Oct-6-like factors){3.1.10.3} 9216 5455 PO3F3_HUMAN P20264
PO3F4_HUMAN.H11MO.0.D HUMAN:POU3F4 17 D 0 dhWTWWGCATAAWYhdd HOCOMOCOv10 HT-SELEX 5283 POU domain factors{3.1.10} POU3 (Oct-6-like factors){3.1.10.3} 9217 5456 PO3F4_HUMAN P49335
PO4F1_HUMAN.H11MO.0.D HUMAN:POU4F1 14 D 0 hATWAATTATTYAd HOCOMOCOv10 HT-SELEX 7624 POU domain factors{3.1.10} POU4 (Brn-3-like factors){3.1.10.4} 9218 5457 PO4F1_HUMAN Q01851
PO4F2_HUMAN.H11MO.0.D HUMAN:POU4F2 13 D 0 YvTTAATGAKhnn HOCOMOCOv9 Integrative 31 POU domain factors{3.1.10} POU4 (Brn-3-like factors){3.1.10.4} 9219 5458 PO4F2_HUMAN Q12837
PO4F3_HUMAN.H11MO.0.D HUMAN:POU4F3 15 D 0 WhATTAATTATTYAh HOCOMOCOv10 HT-SELEX 6312 POU domain factors{3.1.10} POU4 (Brn-3-like factors){3.1.10.4} 9220 5459 PO4F3_HUMAN Q15319
PO5F1_HUMAN.H11MO.0.A HUMAN:POU5F1 16 A 0 bYWTTvWhATGYARAh HOCOMOCOv11 ChIP-Seq 0.977 0.982 44 119 501 POU domain factors{3.1.10} POU5 (Oct-3/4-like factors){3.1.10.5} 9221 5460 PO5F1_HUMAN Q01860
PO5F1_HUMAN.H11MO.1.A HUMAN:POU5F1 10 A 1 dnATGCAvWb HOCOMOCOv11 ChIP-Seq 0.888 0.876 44 119 485 POU domain factors{3.1.10} POU5 (Oct-3/4-like factors){3.1.10.5} 9221 5460 PO5F1_HUMAN Q01860
PO6F1_HUMAN.H11MO.0.D HUMAN:POU6F1 13 D 0 nATAATTTATGCR HOCOMOCOv9 Integrative 14 POU domain factors{3.1.10} POU6 (Brn-5-like factors){3.1.10.6} 9224 5463 PO6F1_HUMAN Q14863
PO6F2_HUMAN.H11MO.0.D HUMAN:POU6F2 11 D 0 dhTAATTAGbh HOCOMOCOv10 HT-SELEX 1481 POU domain factors{3.1.10} POU6 (Brn-5-like factors){3.1.10.6} 21694 11281 PO6F2_HUMAN P78424
HMBX1_HUMAN.H11DI.0.D HUMAN:HMBOX1 10 D 0 dvYTAGTYAn HOCOMOCOv11 ChIP-Seq 0.776 7 579 POU domain factors{3.1.10} HNF1-like factors{3.1.10.7} 26137 79618 HMBX1_HUMAN Q6NT76
HNF1A_HUMAN.H11DI.0.C HUMAN:HNF1A 17 C 0 ndRKWAATGWTTWMYhn HOCOMOCOv11 ChIP-Seq 0.928 3 501 POU domain factors{3.1.10} HNF1-like factors{3.1.10.7} 11621 6927 HNF1A_HUMAN P20823
HNF1B_HUMAN.H11DI.0.A HUMAN:HNF1B 17 A 0 ndRTWAATGWTTRMYhn HOCOMOCOv11 ChIP-Seq 0.953 0.997 5 8 500 POU domain factors{3.1.10} HNF1-like factors{3.1.10.7} 11630 6928 HNF1B_HUMAN P35680
PO2F1_HUMAN.H11DI.0.B HUMAN:POU2F1 19 B 0 nbnYATGYAdATdhvnndn HOCOMOCOv11 ChIP-Seq 0.822 0.687 15 14 103 POU domain factors{3.1.10} POU2 (Oct-1/2-like factors){3.1.10.2} 9212 5451 PO2F1_HUMAN P14859
PO2F2_HUMAN.H11DI.0.A HUMAN:POU2F2 15 A 0 ndhATGCAWAKnnvn HOCOMOCOv11 ChIP-Seq 0.925 14 504 POU domain factors{3.1.10} POU2 (Oct-1/2-like factors){3.1.10.2} 9213 5452 PO2F2_HUMAN P09086
PO3F2_HUMAN.H11DI.0.A HUMAN:POU3F2 20 A 0 nbdSMTGMATWWKbMWddvn HOCOMOCOv11 ChIP-Seq 0.813 0.945 12 22 330 POU domain factors{3.1.10} POU3 (Oct-6-like factors){3.1.10.3} 9215 5454 PO3F2_HUMAN P20265
PO5F1_HUMAN.H11DI.0.A HUMAN:POU5F1 18 A 0 nbYWTTSWhATGYARRhn HOCOMOCOv11 ChIP-Seq 0.986 0.985 44 119 501 POU domain factors{3.1.10} POU5 (Oct-3/4-like factors){3.1.10.5} 9221 5460 PO5F1_HUMAN Q01860
HNF1A_MOUSE.H11MO.0.A MOUSE:Hnf1a 15 A 0 RGTTAWTvWTYdhYv HOCOMOCOv9 Integrative 175 POU domain factors{3.1.10} HNF1-like factors{3.1.10.7} 98504 21405 HNF1A_MOUSE P22361
HNF1B_MOUSE.H11MO.0.A MOUSE:Hnf1b 15 A 0 dRTWAATGWKTWMYh HOCOMOCOv11 ChIP-Seq 0.947 0.995 5 8 500 POU domain factors{3.1.10} HNF1-like factors{3.1.10.7} 98505 21410 HNF1B_MOUSE P27889
HNF1B_MOUSE.H11MO.1.A MOUSE:Hnf1b 13 A 1 hhdGTTAATvWTT HOCOMOCOv11 ChIP-Seq 0.915 0.992 5 8 500 POU domain factors{3.1.10} HNF1-like factors{3.1.10.7} 98505 21410 HNF1B_MOUSE P27889
PIT1_MOUSE.H11MO.0.C MOUSE:Pou1f1 13 C 0 bWMWTGvAWATWh HOCOMOCOv9 Integrative 39 POU domain factors{3.1.10} POU1 (Pit-1-like factors){3.1.10.1} 97588 18736 PIT1_MOUSE Q00286
PO2F1_MOUSE.H11MO.0.C MOUSE:Pou2f1 16 C 0 RnKbvhATGSAAWhRh HOCOMOCOv11 ChIP-Seq 0.766 0.669 15 14 134 POU domain factors{3.1.10} POU2 (Oct-1/2-like factors){3.1.10.2} 101898 18986 PO2F1_MOUSE P25425
PO2F2_MOUSE.H11MO.0.B MOUSE:Pou2f2 11 B 0 dhATGCAWAKd HOCOMOCOv11 ChIP-Seq 0.919 14 501 POU domain factors{3.1.10} POU2 (Oct-1/2-like factors){3.1.10.2} 101897 18987 PO2F2_MOUSE Q00196
PO3F1_MOUSE.H11MO.0.C MOUSE:Pou3f1 16 C 0 bWhATKMAWAWKbMdd HOCOMOCOv11 ChIP-Seq 0.789 10 500 POU domain factors{3.1.10} POU3 (Oct-6-like factors){3.1.10.3} 101896 18991 PO3F1_MOUSE P21952
PO3F2_MOUSE.H11MO.0.A MOUSE:Pou3f2 16 A 0 hhYATGMATAWKYAWd HOCOMOCOv11 ChIP-Seq 0.788 0.943 12 22 500 POU domain factors{3.1.10} POU3 (Oct-6-like factors){3.1.10.3} 101895 18992 PO3F2_MOUSE P31360
PO3F2_MOUSE.H11MO.1.A MOUSE:Pou3f2 17 A 1 dbSWYMTGAATAWKbAW HOCOMOCOv11 ChIP-Seq 0.777 0.934 12 22 284 POU domain factors{3.1.10} POU3 (Oct-6-like factors){3.1.10.3} 101895 18992 PO3F2_MOUSE P31360
PO4F2_MOUSE.H11MO.0.D MOUSE:Pou4f2 13 D 0 YvTTAATGAKhnn HOCOMOCOv9 Integrative 31 POU domain factors{3.1.10} POU4 (Brn-3-like factors){3.1.10.4} 102524 18997 PO4F2_MOUSE Q63934
PO5F1_MOUSE.H11MO.0.A MOUSE:Pou5f1 16 A 0 bYWTTSWhATGYWRAW HOCOMOCOv11 ChIP-Seq 0.98 0.985 44 119 499 POU domain factors{3.1.10} POU5 (Oct-3/4-like factors){3.1.10.5} 101893 18999 PO5F1_MOUSE P20263
PO5F1_MOUSE.H11MO.1.A MOUSE:Pou5f1 9 A 1 hWTGCWRAh HOCOMOCOv11 ChIP-Seq 0.873 0.877 44 119 498 POU domain factors{3.1.10} POU5 (Oct-3/4-like factors){3.1.10.5} 101893 18999 PO5F1_MOUSE P20263
PO6F1_MOUSE.H11MO.0.D MOUSE:Pou6f1 13 D 0 nATAATTTATGCR HOCOMOCOv9 Integrative 14 POU domain factors{3.1.10} POU6 (Brn-5-like factors){3.1.10.6} 102935 19009 PO6F1_MOUSE Q07916
HNF1B_MOUSE.H11DI.0.A MOUSE:Hnf1b 17 A 0 ndRTWAATGWTTRMYhn HOCOMOCOv11 ChIP-Seq 0.953 0.997 5 8 500 POU domain factors{3.1.10} HNF1-like factors{3.1.10.7} 98505 21410 HNF1B_MOUSE P27889
PO2F1_MOUSE.H11DI.0.B MOUSE:Pou2f1 19 B 0 nbnYATGYAdATdhvnndn HOCOMOCOv11 ChIP-Seq 0.822 0.687 15 14 103 POU domain factors{3.1.10} POU2 (Oct-1/2-like factors){3.1.10.2} 101898 18986 PO2F1_MOUSE P25425
PO3F1_MOUSE.H11DI.0.B MOUSE:Pou3f1 19 B 0 nbdbWTGMATWhnnMWdvn HOCOMOCOv11 ChIP-Seq 0.849 10 504 POU domain factors{3.1.10} POU3 (Oct-6-like factors){3.1.10.3} 101896 18991 PO3F1_MOUSE P21952
PO3F2_MOUSE.H11DI.0.A MOUSE:Pou3f2 19 A 0 bdnnbdYATGMATAWKYMW HOCOMOCOv11 ChIP-Seq 0.787 0.956 12 22 385 POU domain factors{3.1.10} POU3 (Oct-6-like factors){3.1.10.3} 101895 18992 PO3F2_MOUSE P31360
PO5F1_MOUSE.H11DI.0.A MOUSE:Pou5f1 19 A 0 bbhWTTSThATGYWRAWdn HOCOMOCOv11 ChIP-Seq 0.984 0.988 44 119 495 POU domain factors{3.1.10} POU5 (Oct-3/4-like factors){3.1.10.5} 101893 18999 PO5F1_MOUSE P20263