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PWMs for transcription factors
Model Transcription factor Model length Quality
 Model rank Consensus Model release Data source Best auROC (human) Best auROC (mouse) Peak sets in benchmark (human) Peak sets in benchmark (mouse) Aligned words TF family TF subfamily HGNC MGI EntrezGene UniProt ID UniProt AC
HBP1_HUMAN.H11MO.0.D HUMAN:HBP1 9 D 0 RnYSATTGA HOCOMOCOv9 Integrative 5 SOX-related factors{4.1.1} Further Sox-related factors{4.1.1.9} 23200 26959 HBP1_HUMAN O60381
SOX10_HUMAN.H11MO.0.B HUMAN:SOX10 16 B 0 vARdRvvnbYWTTGTb HOCOMOCOv11 ChIP-Seq 0.91 0.763 3 3 500 SOX-related factors{4.1.1} Group E{4.1.1.5} 11190 6663 SOX10_HUMAN P56693
SOX10_HUMAN.H11MO.1.A HUMAN:SOX10 13 A 1 bbbCTTTSTbYhh HOCOMOCOv11 ChIP-Seq 0.833 0.832 3 3 505 SOX-related factors{4.1.1} Group E{4.1.1.5} 11190 6663 SOX10_HUMAN P56693
SOX11_HUMAN.H11MO.0.D HUMAN:SOX11 16 D 0 RACAMTRhMATTGTYb HOCOMOCOv10 HT-SELEX 220 SOX-related factors{4.1.1} Group C{4.1.1.3} 11191 6664 SOX11_HUMAN P35716
SOX13_HUMAN.H11MO.0.D HUMAN:SOX13 8 D 0 nATTGTKn HOCOMOCOv9 Integrative 5 SOX-related factors{4.1.1} Group D{4.1.1.4} 11192 9580 SOX13_HUMAN Q9UN79
SOX15_HUMAN.H11MO.0.D HUMAN:SOX15 7 D 0 CWTTGTT HOCOMOCOv9 Integrative 8 SOX-related factors{4.1.1} Group G{4.1.1.7} 11196 6665 SOX15_HUMAN O60248
SOX17_HUMAN.H11MO.0.C HUMAN:SOX17 11 C 0 bCCATYKTbbb HOCOMOCOv11 ChIP-Seq 0.835 4 500 SOX-related factors{4.1.1} Group F{4.1.1.6} 18122 64321 SOX17_HUMAN Q9H6I2
SOX18_HUMAN.H11MO.0.D HUMAN:SOX18 19 D 0 SMWhnMATTGTYbWnnYYC HOCOMOCOv9 Integrative 8 SOX-related factors{4.1.1} Group F{4.1.1.6} 11194 54345 SOX18_HUMAN P35713
SOX1_HUMAN.H11MO.0.D HUMAN:SOX1 16 D 0 dRTSAATGKTATTCAK HOCOMOCOv10 HT-SELEX 40 SOX-related factors{4.1.1} Group B{4.1.1.2} 11189 6656 SOX1_HUMAN O00570
SOX21_HUMAN.H11MO.0.D HUMAN:SOX21 16 D 0 dRWSAATGdYAKTSWb HOCOMOCOv10 HT-SELEX 14076 SOX-related factors{4.1.1} Group B{4.1.1.2} 11197 11166 SOX21_HUMAN Q9Y651
SOX2_HUMAN.H11MO.0.A HUMAN:SOX2 13 A 0 bbYCTTTGTbhbb HOCOMOCOv11 ChIP-Seq 0.944 0.922 67 109 500 SOX-related factors{4.1.1} Group B{4.1.1.2} 11195 6657 SOX2_HUMAN P48431
SOX2_HUMAN.H11MO.1.A HUMAN:SOX2 16 A 1 bYYWTTSTbhTKYhdW HOCOMOCOv11 ChIP-Seq 0.957 0.955 67 109 500 SOX-related factors{4.1.1} Group B{4.1.1.2} 11195 6657 SOX2_HUMAN P48431
SOX3_HUMAN.H11MO.0.B HUMAN:SOX3 11 B 0 bYCWTTGTbhb HOCOMOCOv11 ChIP-Seq 0.717 0.882 2 4 500 SOX-related factors{4.1.1} Group B{4.1.1.2} 11199 6658 SOX3_HUMAN P41225
SOX4_HUMAN.H11MO.0.B HUMAN:SOX4 12 B 0 bYCTTTGTYYbb HOCOMOCOv11 ChIP-Seq 0.64 0.978 2 7 500 SOX-related factors{4.1.1} Group C{4.1.1.3} 11200 6659 SOX4_HUMAN Q06945
SOX5_HUMAN.H11MO.0.C HUMAN:SOX5 8 C 0 bATTGTTh HOCOMOCOv9 Integrative 69 SOX-related factors{4.1.1} Group D{4.1.1.4} 11201 6660 SOX5_HUMAN P35711
SOX7_HUMAN.H11MO.0.D HUMAN:SOX7 16 D 0 RACAMTGhMATTGTYh HOCOMOCOv10 HT-SELEX 700 SOX-related factors{4.1.1} Group F{4.1.1.6} 18196 83595 SOX7_HUMAN Q9BT81
SOX8_HUMAN.H11MO.0.D HUMAN:SOX8 16 D 0 WvACTGhAATTSWYbh HOCOMOCOv10 HT-SELEX 4026 SOX-related factors{4.1.1} Group E{4.1.1.5} 11203 30812 SOX8_HUMAN P57073
SOX9_HUMAN.H11MO.0.B HUMAN:SOX9 16 B 0 AAdRvnnbYWTTGTKY HOCOMOCOv11 ChIP-Seq 0.718 0.981 6 25 500 SOX-related factors{4.1.1} Group E{4.1.1.5} 11204 6662 SOX9_HUMAN P48436
SOX9_HUMAN.H11MO.1.B HUMAN:SOX9 9 B 1 YSWTTGKYY HOCOMOCOv11 ChIP-Seq 0.777 0.892 6 25 501 SOX-related factors{4.1.1} Group E{4.1.1.5} 11204 6662 SOX9_HUMAN P48436
SRY_HUMAN.H11MO.0.B HUMAN:SRY 9 B 0 bWTTGTWWh HOCOMOCOv9 Integrative 108 SOX-related factors{4.1.1} Group A{4.1.1.1} 11311 6736 SRY_HUMAN Q05066
SOX10_HUMAN.H11DI.0.B HUMAN:SOX10 19 B 0 dWhARdvvnbbCWTTGTbh HOCOMOCOv11 ChIP-Seq 0.936 0.762 3 3 503 SOX-related factors{4.1.1} Group E{4.1.1.5} 11190 6663 SOX10_HUMAN P56693
SOX17_HUMAN.H11DI.0.C HUMAN:SOX17 13 C 0 bvnbCCATYKTdn HOCOMOCOv11 ChIP-Seq 0.856 4 510 SOX-related factors{4.1.1} Group F{4.1.1.6} 18122 64321 SOX17_HUMAN Q9H6I2
SOX2_HUMAN.H11DI.0.A HUMAN:SOX2 18 A 0 nbYYWTTSTbhYbbhddh HOCOMOCOv11 ChIP-Seq 0.975 0.974 67 109 388 SOX-related factors{4.1.1} Group B{4.1.1.2} 11195 6657 SOX2_HUMAN P48431
SOX3_HUMAN.H11DI.0.B HUMAN:SOX3 10 B 0 bSYWTTGTbn HOCOMOCOv11 ChIP-Seq 0.685 0.888 2 4 456 SOX-related factors{4.1.1} Group B{4.1.1.2} 11199 6658 SOX3_HUMAN P41225
SOX4_HUMAN.H11DI.0.B HUMAN:SOX4 13 B 0 bbYCTTTGTYYbb HOCOMOCOv11 ChIP-Seq 0.67 0.976 2 7 350 SOX-related factors{4.1.1} Group C{4.1.1.3} 11200 6659 SOX4_HUMAN Q06945
SOX9_HUMAN.H11DI.0.B HUMAN:SOX9 19 B 0 vMMAARRvnnbCWTTGTKh HOCOMOCOv11 ChIP-Seq 0.663 0.987 6 25 501 SOX-related factors{4.1.1} Group E{4.1.1.5} 11204 6662 SOX9_HUMAN P48436
HBP1_MOUSE.H11MO.0.D MOUSE:Hbp1 9 D 0 RnYSATTGA HOCOMOCOv9 Integrative 5 SOX-related factors{4.1.1} Further Sox-related factors{4.1.1.9} 894659 73389 HBP1_MOUSE Q8R316
SOX13_MOUSE.H11MO.0.D MOUSE:Sox13 8 D 0 nATTGTKn HOCOMOCOv9 Integrative 5 SOX-related factors{4.1.1} Group D{4.1.1.4} 98361 20668 SOX13_MOUSE Q04891
SOX15_MOUSE.H11MO.0.D MOUSE:Sox15 7 D 0 CWTTGTT HOCOMOCOv9 Integrative 8 SOX-related factors{4.1.1} Group G{4.1.1.7} 98363 20670 SOX15_MOUSE P43267
SOX17_MOUSE.H11MO.0.D MOUSE:Sox17 11 D 0 bCCATYKTbbb HOCOMOCOv11 ChIP-Seq 0.835 4 500 SOX-related factors{4.1.1} Group F{4.1.1.6} 107543 20671 SOX17_MOUSE Q61473
SOX18_MOUSE.H11MO.0.D MOUSE:Sox18 19 D 0 SMWhnMATTGTYbWnnYYC HOCOMOCOv9 Integrative 8 SOX-related factors{4.1.1} Group F{4.1.1.6} 103559 20672 SOX18_MOUSE P43680
SOX2_MOUSE.H11MO.0.A MOUSE:Sox2 16 A 0 bbYWTTSTnWTKYWdW HOCOMOCOv11 ChIP-Seq 0.955 0.958 67 109 499 SOX-related factors{4.1.1} Group B{4.1.1.2} 98364 20674 SOX2_MOUSE P48432
SOX2_MOUSE.H11MO.1.A MOUSE:Sox2 13 A 1 hbYYWTTGTbhbb HOCOMOCOv11 ChIP-Seq 0.944 0.926 67 109 500 SOX-related factors{4.1.1} Group B{4.1.1.2} 98364 20674 SOX2_MOUSE P48432
SOX3_MOUSE.H11MO.0.C MOUSE:Sox3 11 C 0 bYCTTTGTbnb HOCOMOCOv11 ChIP-Seq 0.559 0.914 2 4 344 SOX-related factors{4.1.1} Group B{4.1.1.2} 98365 SOX3_MOUSE P53784
SOX4_MOUSE.H11MO.0.A MOUSE:Sox4 12 A 0 bYCTTTGTYYbb HOCOMOCOv11 ChIP-Seq 0.64 0.978 2 7 500 SOX-related factors{4.1.1} Group C{4.1.1.3} 98366 20677 SOX4_MOUSE Q06831
SOX5_MOUSE.H11MO.0.C MOUSE:Sox5 8 C 0 bATTGTTh HOCOMOCOv9 Integrative 69 SOX-related factors{4.1.1} Group D{4.1.1.4} 98367 20678 SOX5_MOUSE P35710
SOX9_MOUSE.H11MO.0.A MOUSE:Sox9 16 A 0 AAdRvnnbYWTTGTKY HOCOMOCOv11 ChIP-Seq 0.718 0.981 6 25 500 SOX-related factors{4.1.1} Group E{4.1.1.5} 98371 20682 SOX9_MOUSE Q04887
SOX9_MOUSE.H11MO.1.A MOUSE:Sox9 11 A 1 bCWYTGTKYhb HOCOMOCOv11 ChIP-Seq 0.679 0.93 6 25 499 SOX-related factors{4.1.1} Group E{4.1.1.5} 98371 20682 SOX9_MOUSE Q04887
SRY_MOUSE.H11MO.0.B MOUSE:Sry 9 B 0 bWTTGTWWh HOCOMOCOv9 Integrative 108 SOX-related factors{4.1.1} Group A{4.1.1.1} 98660 21674 SRY_MOUSE Q05738
SOX2_MOUSE.H11DI.0.A MOUSE:Sox2 19 A 0 nbSYWTTGTbhWKbhnMhn HOCOMOCOv11 ChIP-Seq 0.971 0.976 67 109 512 SOX-related factors{4.1.1} Group B{4.1.1.2} 98364 20674 SOX2_MOUSE P48432
SOX3_MOUSE.H11DI.0.C MOUSE:Sox3 13 C 0 nbYCWTTGTbbbb HOCOMOCOv11 ChIP-Seq 0.595 0.911 2 4 348 SOX-related factors{4.1.1} Group B{4.1.1.2} 98365 SOX3_MOUSE P53784
SOX4_MOUSE.H11DI.0.A MOUSE:Sox4 13 A 0 nbYCTTTGTYYbb HOCOMOCOv11 ChIP-Seq 0.637 0.981 2 7 500 SOX-related factors{4.1.1} Group C{4.1.1.3} 98366 20677 SOX4_MOUSE Q06831
SOX9_MOUSE.H11DI.0.A MOUSE:Sox9 19 A 0 vMMAAdRvvnbCWTTGTKb HOCOMOCOv11 ChIP-Seq 0.655 0.989 6 25 500 SOX-related factors{4.1.1} Group E{4.1.1.5} 98371 20682 SOX9_MOUSE Q04887