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PWMs for transcription factors
Model Transcription factor Model length Quality
 Model rank Consensus Model release Data source Best auROC (human) Best auROC (mouse) Peak sets in benchmark (human) Peak sets in benchmark (mouse) Aligned words TF family TF subfamily HGNC MGI EntrezGene UniProt ID UniProt AC
ATOH1_HUMAN.H11MO.0.B HUMAN:ATOH1 9 B 0 RRCAGMTGK HOCOMOCOv11 ChIP-Seq 0.759 0.988 3 4 502 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 797 474 ATOH1_HUMAN Q92858
BHA15_HUMAN.H11MO.0.B HUMAN:BHLHA15 11 B 0 vvRRCAGCTGK HOCOMOCOv11 ChIP-Seq 0.988 6 500 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 22265 168620 BHA15_HUMAN Q7RTS1
BHE22_HUMAN.H11MO.0.D HUMAN:BHLHE22 13 D 0 dvCATATGTTYhh HOCOMOCOv10 HT-SELEX 2250 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 11963 27319 BHE22_HUMAN Q8NFJ8
BHE23_HUMAN.H11MO.0.D HUMAN:BHLHE23 12 D 0 dvnRKRTGKKdb HOCOMOCOv10 HT-SELEX 394 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 16093 128408 BHE23_HUMAN Q8NDY6
FIGLA_HUMAN.H11MO.0.D HUMAN:FIGLA 11 D 0 dnhCAGGTGbd HOCOMOCOv10 HT-SELEX 159 Tal-related factors{1.2.3} Twist-like factors{1.2.3.2} 24669 344018 FIGLA_HUMAN Q6QHK4
HAND1_HUMAN.H11MO.0.D HUMAN:HAND1 17 D 0 ddbYCTGShhWnYvTCW HOCOMOCOv11 ChIP-Seq 0.995 3 500 Tal-related factors{1.2.3} Twist-like factors{1.2.3.2} 4807 9421 HAND1_HUMAN O96004
HAND1_HUMAN.H11MO.1.D HUMAN:HAND1 7 D 1 dSYCTGS HOCOMOCOv11 ChIP-Seq 0.951 3 500 Tal-related factors{1.2.3} Twist-like factors{1.2.3.2} 4807 9421 HAND1_HUMAN O96004
HEN1_HUMAN.H11MO.0.C HUMAN:NHLH1 20 C 0 bKGGnMbCAGCTGCGKCYhh HOCOMOCOv9 Integrative 55 Tal-related factors{1.2.3} Tal / HEN-like factors{1.2.3.1} 7817 4807 HEN1_HUMAN Q02575
LYL1_HUMAN.H11MO.0.A HUMAN:LYL1 14 A 0 vMWbMTGYbhYbbb HOCOMOCOv11 ChIP-Seq 0.852 0.808 23 3 453 Tal-related factors{1.2.3} Tal / HEN-like factors{1.2.3.1} 6734 4066 LYL1_HUMAN P12980
MESP1_HUMAN.H11MO.0.D HUMAN:MESP1 11 D 0 nCAGGTGbdnn HOCOMOCOv10 HT-SELEX 61 Tal-related factors{1.2.3} Mesp-like factors{1.2.3.3} 29658 55897 MESP1_HUMAN Q9BRJ9
NDF1_HUMAN.H11MO.0.A HUMAN:NEUROD1 10 A 0 RRCAGMTGGb HOCOMOCOv11 ChIP-Seq 0.946 0.952 5 2 503 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 7762 4760 NDF1_HUMAN Q13562
NDF2_HUMAN.H11MO.0.B HUMAN:NEUROD2 9 B 0 RRCAGMTGG HOCOMOCOv11 ChIP-Seq 0.594 0.963 2 21 502 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 7763 4761 NDF2_HUMAN Q15784
NGN2_HUMAN.H11MO.0.D HUMAN:NEUROG2 12 D 0 vbRRCAGATGKb HOCOMOCOv11 ChIP-Seq 0.977 4 206 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 13805 63973 NGN2_HUMAN Q9H2A3
OLIG1_HUMAN.H11MO.0.D HUMAN:OLIG1 14 D 0 AMCATATGTTTWbb HOCOMOCOv10 HT-SELEX 495 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 16983 116448 OLIG1_HUMAN Q8TAK6
OLIG2_HUMAN.H11MO.0.B HUMAN:OLIG2 18 B 0 MCAKCTGYYbbbhdbhhb HOCOMOCOv11 ChIP-Seq 0.925 19 500 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 9398 10215 OLIG2_HUMAN Q13516
OLIG2_HUMAN.H11MO.1.B HUMAN:OLIG2 10 B 1 hMWKMTGYYb HOCOMOCOv11 ChIP-Seq 0.905 19 500 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 9398 10215 OLIG2_HUMAN Q13516
OLIG3_HUMAN.H11MO.0.D HUMAN:OLIG3 11 D 0 RMCATATGKTn HOCOMOCOv10 HT-SELEX 3197 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 18003 167826 OLIG3_HUMAN Q7RTU3
PTF1A_HUMAN.H11MO.0.B HUMAN:PTF1A 18 B 0 vCAGCTGbbnbbbbYYhv HOCOMOCOv11 ChIP-Seq 0.963 20 500 Tal-related factors{1.2.3} Twist-like factors{1.2.3.2} 23734 256297 PTF1A_HUMAN Q7RTS3
PTF1A_HUMAN.H11MO.1.B HUMAN:PTF1A 9 B 1 RRCAGMTGK HOCOMOCOv11 ChIP-Seq 0.93 20 503 Tal-related factors{1.2.3} Twist-like factors{1.2.3.2} 23734 256297 PTF1A_HUMAN Q7RTS3
TAL1_HUMAN.H11MO.0.A HUMAN:TAL1 19 A 0 bKKbnnnnnvvWGATAASv HOCOMOCOv11 ChIP-Seq 0.978 0.968 68 76 500 Tal-related factors{1.2.3} Tal / HEN-like factors{1.2.3.1} 11556 6886 TAL1_HUMAN P17542
TAL1_HUMAN.H11MO.1.A HUMAN:TAL1 15 A 1 vvdvhRRCAGvTGbb HOCOMOCOv11 ChIP-Seq 0.828 0.73 68 76 500 Tal-related factors{1.2.3} Tal / HEN-like factors{1.2.3.1} 11556 6886 TAL1_HUMAN P17542
TWST1_HUMAN.H11MO.0.A HUMAN:TWIST1 17 A 0 vCAKMTGKWWbbvRTYW HOCOMOCOv11 ChIP-Seq 0.969 0.539 9 8 497 Tal-related factors{1.2.3} Twist-like factors{1.2.3.2} 12428 7291 TWST1_HUMAN Q15672
TWST1_HUMAN.H11MO.1.A HUMAN:TWIST1 10 A 1 nvCATSTGKW HOCOMOCOv11 ChIP-Seq 0.971 0.567 9 8 502 Tal-related factors{1.2.3} Twist-like factors{1.2.3.2} 12428 7291 TWST1_HUMAN Q15672
ATOH1_HUMAN.H11DI.0.B HUMAN:ATOH1 13 B 0 ndnRRCAGMTGSn HOCOMOCOv11 ChIP-Seq 0.788 0.996 3 4 501 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 797 474 ATOH1_HUMAN Q92858
LYL1_HUMAN.H11DI.0.A HUMAN:LYL1 13 A 0 nhYWbCTSbbnhn HOCOMOCOv11 ChIP-Seq 0.884 0.854 23 3 476 Tal-related factors{1.2.3} Tal / HEN-like factors{1.2.3.1} 6734 4066 LYL1_HUMAN P12980
NDF1_HUMAN.H11DI.0.A HUMAN:NEUROD1 14 A 0 nvnRRCAGATGGbn HOCOMOCOv11 ChIP-Seq 0.949 0.96 5 2 507 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 7762 4760 NDF1_HUMAN Q13562
NDF2_HUMAN.H11DI.0.B HUMAN:NEUROD2 15 B 0 dvvvnRRCAGATGGn HOCOMOCOv11 ChIP-Seq 0.619 0.97 2 21 560 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 7763 4761 NDF2_HUMAN Q15784
TAL1_HUMAN.H11DI.0.A HUMAN:TAL1 23 A 0 nnnbYKbnnnnnnbWGATAAvvn HOCOMOCOv11 ChIP-Seq 0.99 0.977 68 76 503 Tal-related factors{1.2.3} Tal / HEN-like factors{1.2.3.1} 11556 6886 TAL1_HUMAN P17542
TWST1_HUMAN.H11DI.0.A HUMAN:TWIST1 20 A 0 nvCAKCTGKhhbbvAKhWdn HOCOMOCOv11 ChIP-Seq 0.997 0.568 9 8 225 Tal-related factors{1.2.3} Twist-like factors{1.2.3.2} 12428 7291 TWST1_HUMAN Q15672
ATOH1_MOUSE.H11MO.0.B MOUSE:Atoh1 9 B 0 RRCAGMTGK HOCOMOCOv11 ChIP-Seq 0.759 0.988 3 4 502 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 104654 11921 ATOH1_MOUSE P48985
BHA15_MOUSE.H11MO.0.A MOUSE:Bhlha15 11 A 0 vvRRCAGCTGK HOCOMOCOv11 ChIP-Seq 0.988 6 500 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 891976 17341 BHA15_MOUSE Q9QYC3
HAND1_MOUSE.H11MO.0.C MOUSE:Hand1 17 C 0 ddbYCTGShhWnYvTCW HOCOMOCOv11 ChIP-Seq 0.995 3 500 Tal-related factors{1.2.3} Twist-like factors{1.2.3.2} 103577 15110 HAND1_MOUSE Q64279
HAND1_MOUSE.H11MO.1.C MOUSE:Hand1 7 C 1 dSYCTGS HOCOMOCOv11 ChIP-Seq 0.951 3 500 Tal-related factors{1.2.3} Twist-like factors{1.2.3.2} 103577 15110 HAND1_MOUSE Q64279
HEN1_MOUSE.H11MO.0.C MOUSE:Nhlh1 20 C 0 bKGGnMbCAGCTGCGKCYhh HOCOMOCOv9 Integrative 55 Tal-related factors{1.2.3} Tal / HEN-like factors{1.2.3.1} 98481 18071 HEN1_MOUSE Q02576
LYL1_MOUSE.H11MO.0.A MOUSE:Lyl1 14 A 0 vMWbMTGYbhYbbb HOCOMOCOv11 ChIP-Seq 0.852 0.808 23 3 453 Tal-related factors{1.2.3} Tal / HEN-like factors{1.2.3.1} 96891 17095 LYL1_MOUSE P27792
MSGN1_MOUSE.H11MO.0.C MOUSE:Msgn1 12 C 0 nCCATTTGKYhh HOCOMOCOv11 ChIP-Seq 0.999 4 500 Tal-related factors{1.2.3} Mesp-like factors{1.2.3.3} 1860483 56184 MSGN1_MOUSE Q9JK54
NDF1_MOUSE.H11MO.0.A MOUSE:Neurod1 10 A 0 RRCAGMTGGb HOCOMOCOv11 ChIP-Seq 0.946 0.952 5 2 503 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 1339708 18012 NDF1_MOUSE Q60867
NDF2_MOUSE.H11MO.0.A MOUSE:Neurod2 10 A 0 RRCAGATGGb HOCOMOCOv11 ChIP-Seq 0.543 0.961 2 21 503 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 107755 18013 NDF2_MOUSE Q62414
NGN2_MOUSE.H11MO.0.C MOUSE:Neurog2 12 C 0 vbRRCAGATGKb HOCOMOCOv11 ChIP-Seq 0.977 4 206 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 109619 11924 NGN2_MOUSE P70447
OLIG2_MOUSE.H11MO.0.A MOUSE:Olig2 18 A 0 MCAKCTGYYbbbhdbhhb HOCOMOCOv11 ChIP-Seq 0.925 19 500 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 1355331 50913 OLIG2_MOUSE Q9EQW6
OLIG2_MOUSE.H11MO.1.A MOUSE:Olig2 10 A 1 hMWKMTGYYb HOCOMOCOv11 ChIP-Seq 0.905 19 500 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 1355331 50913 OLIG2_MOUSE Q9EQW6
PTF1A_MOUSE.H11MO.0.A MOUSE:Ptf1a 18 A 0 vCAGCTGbbnbbbbYYhv HOCOMOCOv11 ChIP-Seq 0.963 20 500 Tal-related factors{1.2.3} Twist-like factors{1.2.3.2} 1328312 19213 PTF1A_MOUSE Q9QX98
PTF1A_MOUSE.H11MO.1.A MOUSE:Ptf1a 9 A 1 RRCAGMTGK HOCOMOCOv11 ChIP-Seq 0.93 20 503 Tal-related factors{1.2.3} Twist-like factors{1.2.3.2} 1328312 19213 PTF1A_MOUSE Q9QX98
TAL1_MOUSE.H11MO.0.A MOUSE:Tal1 20 A 0 bYKbnnnnndvAGATAASvv HOCOMOCOv11 ChIP-Seq 0.965 0.978 68 76 500 Tal-related factors{1.2.3} Tal / HEN-like factors{1.2.3.1} 98480 21349 TAL1_MOUSE P22091
TWST1_MOUSE.H11MO.0.B MOUSE:Twist1 17 B 0 vCAKMTGKWhbbvATYW HOCOMOCOv11 ChIP-Seq 0.969 0.594 9 8 500 Tal-related factors{1.2.3} Twist-like factors{1.2.3.2} 98872 22160 TWST1_MOUSE P26687
TWST1_MOUSE.H11MO.1.B MOUSE:Twist1 11 B 1 vvCAKCTGKhh HOCOMOCOv11 ChIP-Seq 0.978 0.604 9 8 470 Tal-related factors{1.2.3} Twist-like factors{1.2.3.2} 98872 22160 TWST1_MOUSE P26687
ATOH1_MOUSE.H11DI.0.B MOUSE:Atoh1 13 B 0 ndnRRCAGMTGSn HOCOMOCOv11 ChIP-Seq 0.788 0.996 3 4 501 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 104654 11921 ATOH1_MOUSE P48985
BHA15_MOUSE.H11DI.0.A MOUSE:Bhlha15 13 A 0 nvvRRCAGCTGKn HOCOMOCOv11 ChIP-Seq 0.991 6 522 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 891976 17341 BHA15_MOUSE Q9QYC3
HAND1_MOUSE.H11DI.0.C MOUSE:Hand1 19 C 0 nddvYCTGShhWnYvTCWn HOCOMOCOv11 ChIP-Seq 0.998 3 505 Tal-related factors{1.2.3} Twist-like factors{1.2.3.2} 103577 15110 HAND1_MOUSE Q64279
LYL1_MOUSE.H11DI.0.A MOUSE:Lyl1 13 A 0 nhYWbCTSbbnhn HOCOMOCOv11 ChIP-Seq 0.884 0.854 23 3 476 Tal-related factors{1.2.3} Tal / HEN-like factors{1.2.3.1} 96891 17095 LYL1_MOUSE P27792
MSGN1_MOUSE.H11DI.0.C MOUSE:Msgn1 14 C 0 nvCCATTTGKYhhn HOCOMOCOv11 ChIP-Seq 0.999 4 500 Tal-related factors{1.2.3} Mesp-like factors{1.2.3.3} 1860483 56184 MSGN1_MOUSE Q9JK54
NDF1_MOUSE.H11DI.0.A MOUSE:Neurod1 14 A 0 nvnRRCAGATGGbn HOCOMOCOv11 ChIP-Seq 0.949 0.96 5 2 507 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 1339708 18012 NDF1_MOUSE Q60867
NDF2_MOUSE.H11DI.0.A MOUSE:Neurod2 15 A 0 dvvvnRRCAGATGGn HOCOMOCOv11 ChIP-Seq 0.619 0.97 2 21 560 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 107755 18013 NDF2_MOUSE Q62414
NGN2_MOUSE.H11DI.0.C MOUSE:Neurog2 13 C 0 vvnRRCAGATGGb HOCOMOCOv11 ChIP-Seq 0.984 4 513 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 109619 11924 NGN2_MOUSE P70447
OLIG2_MOUSE.H11DI.0.A MOUSE:Olig2 22 A 0 nMCAKMTGYYbhbndbhhbnhn HOCOMOCOv11 ChIP-Seq 0.941 19 500 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 1355331 50913 OLIG2_MOUSE Q9EQW6
PTF1A_MOUSE.H11DI.0.A MOUSE:Ptf1a 20 A 0 nMCAKCTGSbnbhbhbbhhn HOCOMOCOv11 ChIP-Seq 0.969 20 500 Tal-related factors{1.2.3} Twist-like factors{1.2.3.2} 1328312 19213 PTF1A_MOUSE Q9QX98
TAL1_MOUSE.H11DI.0.A MOUSE:Tal1 23 A 0 nnnbbKbnnnnndvWGATAARvn HOCOMOCOv10 ChIP-Seq 0.984 0.987 68 76 502 Tal-related factors{1.2.3} Tal / HEN-like factors{1.2.3.1} 98480 21349 TAL1_MOUSE P22091
TWST1_MOUSE.H11DI.0.B MOUSE:Twist1 19 B 0 nvCAKMTGKWWbbvATYWn HOCOMOCOv11 ChIP-Seq 0.971 0.657 9 8 415 Tal-related factors{1.2.3} Twist-like factors{1.2.3.2} 98872 22160 TWST1_MOUSE P26687