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PWMs for HUMAN transcription factors from Class {1.2}
Model Transcription factor Model length Quality
 Model rank Consensus Model release Data source Best auROC (human) Best auROC (mouse) Peak sets in benchmark (human) Peak sets in benchmark (mouse) Aligned words TF family TF subfamily HGNC EntrezGene UniProt ID UniProt AC
AHR_HUMAN.H11MO.0.B HUMAN:AHR 9 B 0 dKhGCGTGh HOCOMOCOv9 Integrative 157 PAS domain factors{1.2.5} Ahr-like factors{1.2.5.1} 348 196 AHR_HUMAN P35869
ARNT2_HUMAN.H11MO.0.D HUMAN:ARNT2 12 D 0 RnSGTGGvRSRS HOCOMOCOv9 Integrative 18 PAS domain factors{1.2.5} Arnt-like factors{1.2.5.2} 16876 9915 ARNT2_HUMAN Q9HBZ2
ARNT_HUMAN.H11MO.0.B HUMAN:ARNT 9 B 0 vdRCGTGMh HOCOMOCOv11 ChIP-Seq 0.936 8 500 PAS domain factors{1.2.5} Arnt-like factors{1.2.5.2} 700 405 ARNT_HUMAN P27540
ASCL1_HUMAN.H11MO.0.A HUMAN:ASCL1 14 A 0 hnvCASCTGYYbhh HOCOMOCOv11 ChIP-Seq 0.985 0.98 30 25 480 MyoD / ASC-related factors{1.2.2} Achaete-Scute-like factors{1.2.2.2} 738 429 ASCL1_HUMAN P50553
ASCL2_HUMAN.H11MO.0.D HUMAN:ASCL2 9 D 0 vCASCTGCY HOCOMOCOv11 ChIP-Seq 0.594 0.92 8 9 505 MyoD / ASC-related factors{1.2.2} Achaete-Scute-like factors{1.2.2.2} 739 430 ASCL2_HUMAN Q99929
ATOH1_HUMAN.H11MO.0.B HUMAN:ATOH1 9 B 0 RRCAGMTGK HOCOMOCOv11 ChIP-Seq 0.759 0.988 3 4 502 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 797 474 ATOH1_HUMAN Q92858
BHA15_HUMAN.H11MO.0.B HUMAN:BHLHA15 11 B 0 vvRRCAGCTGK HOCOMOCOv11 ChIP-Seq 0.988 6 500 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 22265 168620 BHA15_HUMAN Q7RTS1
BHE22_HUMAN.H11MO.0.D HUMAN:BHLHE22 13 D 0 dvCATATGTTYhh HOCOMOCOv10 HT-SELEX 2250 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 11963 27319 BHE22_HUMAN Q8NFJ8
BHE23_HUMAN.H11MO.0.D HUMAN:BHLHE23 12 D 0 dvnRKRTGKKdb HOCOMOCOv10 HT-SELEX 394 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 16093 128408 BHE23_HUMAN Q8NDY6
BHE40_HUMAN.H11MO.0.A HUMAN:BHLHE40 10 A 0 dKCACGTGMv HOCOMOCOv11 ChIP-Seq 0.855 0.953 10 5 508 Hairy-related factors{1.2.4} Hairy-like factors{1.2.4.1} 1046 8553 BHE40_HUMAN O14503
BHE41_HUMAN.H11MO.0.D HUMAN:BHLHE41 20 D 0 dCnRnSTCRMGTGMhKRnRn HOCOMOCOv9 Integrative 10 Hairy-related factors{1.2.4} Hairy-like factors{1.2.4.1} 16617 79365 BHE41_HUMAN Q9C0J9
BMAL1_HUMAN.H11MO.0.A HUMAN:ARNTL 11 A 0 nSCAYGTGhbb HOCOMOCOv11 ChIP-Seq 0.864 0.875 18 15 410 PAS domain factors{1.2.5} Arnt-like factors{1.2.5.2} 701 406 BMAL1_HUMAN O00327
CLOCK_HUMAN.H11MO.0.C HUMAN:CLOCK 14 C 0 SdvnCAMRYGvvvh HOCOMOCOv11 ChIP-Seq 0.658 0.735 5 22 253 PAS domain factors{1.2.5} Arnt-like factors{1.2.5.2} 2082 9575 CLOCK_HUMAN O15516
EPAS1_HUMAN.H11MO.0.B HUMAN:EPAS1 9 B 0 vdACGTGhh HOCOMOCOv11 ChIP-Seq 0.838 24 500 PAS domain factors{1.2.5} Ahr-like factors{1.2.5.1} 3374 2034 EPAS1_HUMAN Q99814
FIGLA_HUMAN.H11MO.0.D HUMAN:FIGLA 11 D 0 dnhCAGGTGbd HOCOMOCOv10 HT-SELEX 159 Tal-related factors{1.2.3} Twist-like factors{1.2.3.2} 24669 344018 FIGLA_HUMAN Q6QHK4
HAND1_HUMAN.H11MO.0.D HUMAN:HAND1 17 D 0 ddbYCTGShhWnYvTCW HOCOMOCOv11 ChIP-Seq 0.995 3 500 Tal-related factors{1.2.3} Twist-like factors{1.2.3.2} 4807 9421 HAND1_HUMAN O96004
HAND1_HUMAN.H11MO.1.D HUMAN:HAND1 7 D 1 dSYCTGS HOCOMOCOv11 ChIP-Seq 0.951 3 500 Tal-related factors{1.2.3} Twist-like factors{1.2.3.2} 4807 9421 HAND1_HUMAN O96004
HEN1_HUMAN.H11MO.0.C HUMAN:NHLH1 20 C 0 bKGGnMbCAGCTGCGKCYhh HOCOMOCOv9 Integrative 55 Tal-related factors{1.2.3} Tal / HEN-like factors{1.2.3.1} 7817 4807 HEN1_HUMAN Q02575
HES1_HUMAN.H11MO.0.D HUMAN:HES1 13 D 0 vMSvCAMKvGMhv HOCOMOCOv9 Integrative 28 Hairy-related factors{1.2.4} Hairy-like factors{1.2.4.1} 5192 3280 HES1_HUMAN Q14469
HES5_HUMAN.H11MO.0.D HUMAN:HES5 12 D 0 hGGCACGTGYCd HOCOMOCOv10 HT-SELEX 6731 Hairy-related factors{1.2.4} Hairy-like factors{1.2.4.1} 19764 388585 HES5_HUMAN Q5TA89
HES7_HUMAN.H11MO.0.D HUMAN:HES7 12 D 0 WGGCACGTGCCd HOCOMOCOv10 HT-SELEX 379 Hairy-related factors{1.2.4} Hairy-like factors{1.2.4.1} 15977 84667 HES7_HUMAN Q9BYE0
HEY1_HUMAN.H11MO.0.D HUMAN:HEY1 12 D 0 bKRCACGTGbSd HOCOMOCOv10 HT-SELEX 265 Hairy-related factors{1.2.4} Hairy-like factors{1.2.4.1} 4880 23462 HEY1_HUMAN Q9Y5J3
HEY2_HUMAN.H11MO.0.D HUMAN:HEY2 17 D 0 GKKSGCWCGTGSCnYKv HOCOMOCOv9 Integrative 8 Hairy-related factors{1.2.4} Hairy-like factors{1.2.4.1} 4881 23493 HEY2_HUMAN Q9UBP5
HIF1A_HUMAN.H11MO.0.C HUMAN:HIF1A 8 C 0 vdACGTGh HOCOMOCOv11 ChIP-Seq 0.762 0.738 39 8 501 PAS domain factors{1.2.5} Ahr-like factors{1.2.5.1} 4910 3091 HIF1A_HUMAN Q16665
HTF4_HUMAN.H11MO.0.A HUMAN:TCF12 10 A 0 nSCAGSTGKS HOCOMOCOv11 ChIP-Seq 0.915 0.987 49 10 502 E2A-related factors{1.2.1} HTF-4 (TCF-12, HEB){1.2.1.0.3} 11623 6938 HTF4_HUMAN Q99081
ID4_HUMAN.H11MO.0.D HUMAN:ID4 11 D 0 nnCAGGTGhnn HOCOMOCOv10 HT-SELEX 210 HLH domain only{1.2.8} Id4{1.2.8.0.4} 5363 3400 ID4_HUMAN P47928
ITF2_HUMAN.H11MO.0.C HUMAN:TCF4 10 C 0 dSCAGSTGbb HOCOMOCOv11 ChIP-Seq 0.949 4 499 E2A-related factors{1.2.1} SEF2 (E2-2, TCF-4, ITF-2){1.2.1.0.2} 11634 6925 ITF2_HUMAN P15884
LYL1_HUMAN.H11MO.0.A HUMAN:LYL1 14 A 0 vMWbMTGYbhYbbb HOCOMOCOv11 ChIP-Seq 0.852 0.808 23 3 453 Tal-related factors{1.2.3} Tal / HEN-like factors{1.2.3.1} 6734 4066 LYL1_HUMAN P12980
MAX_HUMAN.H11MO.0.A HUMAN:MAX 10 A 0 vnSCACGYGK HOCOMOCOv11 ChIP-Seq 0.95 0.947 86 14 501 bHLH-ZIP factors{1.2.6} Myc / Max factors{1.2.6.5} 6913 4149 MAX_HUMAN P61244
MESP1_HUMAN.H11MO.0.D HUMAN:MESP1 11 D 0 nCAGGTGbdnn HOCOMOCOv10 HT-SELEX 61 Tal-related factors{1.2.3} Mesp-like factors{1.2.3.3} 29658 55897 MESP1_HUMAN Q9BRJ9
MGAP_HUMAN.H11MO.0.D HUMAN:MGA 16 D 0 RRGTGTKAnWTWTMRC HOCOMOCOv10 HT-SELEX 6178 bHLH-ZIP factors{1.2.6};
TBX6-related factors{6.5.5}		 Mad-like factors{1.2.6.7};
MGA (MAD5){6.5.5.0.2}		 14010 23269 MGAP_HUMAN Q8IWI9
MITF_HUMAN.H11MO.0.A HUMAN:MITF 10 A 0 YCACGTGACh HOCOMOCOv11 ChIP-Seq 0.999 0.824 28 3 516 bHLH-ZIP factors{1.2.6} TFE3-like factors{1.2.6.1} 7105 4286 MITF_HUMAN O75030
MLXPL_HUMAN.H11MO.0.D HUMAN:MLXIPL 19 D 0 SCAYGKGRMMMYnbSGTGb HOCOMOCOv9 Integrative 11 bHLH-ZIP factors{1.2.6} Mondo-like factors{1.2.6.6} 12744 51085 MLXPL_HUMAN Q9NP71
MLX_HUMAN.H11MO.0.D HUMAN:MLX 11 D 0 hdRWCACGTGn HOCOMOCOv10 HT-SELEX 18958 bHLH-ZIP factors{1.2.6} Mondo-like factors{1.2.6.6} 11645 6945 MLX_HUMAN Q9UH92
MXI1_HUMAN.H11MO.0.A HUMAN:MXI1 15 A 0 vCACRYGKvnSbbbv HOCOMOCOv10 ChIP-Seq 0.878 0.973 10 5 500 bHLH-ZIP factors{1.2.6} Mad-like factors{1.2.6.7} 7534 4601 MXI1_HUMAN P50539
MXI1_HUMAN.H11MO.1.A HUMAN:MXI1 11 A 1 SMCACRTGbhb HOCOMOCOv11 ChIP-Seq 0.871 0.96 10 5 500 bHLH-ZIP factors{1.2.6} Mad-like factors{1.2.6.7} 7534 4601 MXI1_HUMAN P50539
MYCN_HUMAN.H11MO.0.A HUMAN:MYCN 12 A 0 vRvCACGTGbdv HOCOMOCOv11 ChIP-Seq 0.919 0.899 32 10 501 bHLH-ZIP factors{1.2.6} Myc / Max factors{1.2.6.5} 7559 4613 MYCN_HUMAN P04198
MYC_HUMAN.H11MO.0.A HUMAN:MYC 11 A 0 vMCACGTGShb HOCOMOCOv11 ChIP-Seq 0.947 0.948 265 126 501 bHLH-ZIP factors{1.2.6} Myc / Max factors{1.2.6.5} 7553 4609 MYC_HUMAN P01106
MYF6_HUMAN.H11MO.0.C HUMAN:MYF6 7 C 0 CAGCTGC HOCOMOCOv9 Integrative 9 MyoD / ASC-related factors{1.2.2} Myogenic transcription factors{1.2.2.1} 7566 4618 MYF6_HUMAN P23409
MYOD1_HUMAN.H11MO.0.A HUMAN:MYOD1 15 A 0 vCAGCTGYYnYbbbh HOCOMOCOv11 ChIP-Seq 0.99 0.992 9 63 500 MyoD / ASC-related factors{1.2.2} Myogenic transcription factors{1.2.2.1} 7611 4654 MYOD1_HUMAN P15172
MYOD1_HUMAN.H11MO.1.A HUMAN:MYOD1 11 A 1 bnbCAGCTGTY HOCOMOCOv11 ChIP-Seq 0.984 0.988 9 63 500 MyoD / ASC-related factors{1.2.2} Myogenic transcription factors{1.2.2.1} 7611 4654 MYOD1_HUMAN P15172
MYOG_HUMAN.H11MO.0.B HUMAN:MYOG 13 B 0 bhvCAGCTGYYhb HOCOMOCOv11 ChIP-Seq 0.994 20 500 MyoD / ASC-related factors{1.2.2} Myogenic transcription factors{1.2.2.1} 7612 4656 MYOG_HUMAN P15173
NDF1_HUMAN.H11MO.0.A HUMAN:NEUROD1 10 A 0 RRCAGMTGGb HOCOMOCOv11 ChIP-Seq 0.946 0.952 5 2 503 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 7762 4760 NDF1_HUMAN Q13562
NDF2_HUMAN.H11MO.0.B HUMAN:NEUROD2 9 B 0 RRCAGMTGG HOCOMOCOv11 ChIP-Seq 0.594 0.963 2 21 502 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 7763 4761 NDF2_HUMAN Q15784
NGN2_HUMAN.H11MO.0.D HUMAN:NEUROG2 12 D 0 vbRRCAGATGKb HOCOMOCOv11 ChIP-Seq 0.977 4 206 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 13805 63973 NGN2_HUMAN Q9H2A3
OLIG1_HUMAN.H11MO.0.D HUMAN:OLIG1 14 D 0 AMCATATGTTTWbb HOCOMOCOv10 HT-SELEX 495 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 16983 116448 OLIG1_HUMAN Q8TAK6
OLIG2_HUMAN.H11MO.0.B HUMAN:OLIG2 18 B 0 MCAKCTGYYbbbhdbhhb HOCOMOCOv11 ChIP-Seq 0.925 19 500 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 9398 10215 OLIG2_HUMAN Q13516
OLIG2_HUMAN.H11MO.1.B HUMAN:OLIG2 10 B 1 hMWKMTGYYb HOCOMOCOv11 ChIP-Seq 0.905 19 500 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 9398 10215 OLIG2_HUMAN Q13516
OLIG3_HUMAN.H11MO.0.D HUMAN:OLIG3 11 D 0 RMCATATGKTn HOCOMOCOv10 HT-SELEX 3197 Tal-related factors{1.2.3} Neurogenin / Atonal-like factors{1.2.3.4} 18003 167826 OLIG3_HUMAN Q7RTU3
PTF1A_HUMAN.H11MO.0.B HUMAN:PTF1A 18 B 0 vCAGCTGbbnbbbbYYhv HOCOMOCOv11 ChIP-Seq 0.963 20 500 Tal-related factors{1.2.3} Twist-like factors{1.2.3.2} 23734 256297 PTF1A_HUMAN Q7RTS3
PTF1A_HUMAN.H11MO.1.B HUMAN:PTF1A 9 B 1 RRCAGMTGK HOCOMOCOv11 ChIP-Seq 0.93 20 503 Tal-related factors{1.2.3} Twist-like factors{1.2.3.2} 23734 256297 PTF1A_HUMAN Q7RTS3
SRBP1_HUMAN.H11MO.0.A HUMAN:SREBF1 11 A 0 dRKSRSGTGAb HOCOMOCOv11 ChIP-Seq 0.92 0.67 5 23 500 bHLH-ZIP factors{1.2.6} SREBP factors{1.2.6.3} 11289 6720 SRBP1_HUMAN P36956
SRBP2_HUMAN.H11MO.0.B HUMAN:SREBF2 13 B 0 vvvWGGvSWGRnb HOCOMOCOv9 Integrative 2363 bHLH-ZIP factors{1.2.6} SREBP factors{1.2.6.3} 11290 6721 SRBP2_HUMAN Q12772
TAL1_HUMAN.H11MO.0.A HUMAN:TAL1 19 A 0 bKKbnnnnnvvWGATAASv HOCOMOCOv11 ChIP-Seq 0.978 0.968 68 76 500 Tal-related factors{1.2.3} Tal / HEN-like factors{1.2.3.1} 11556 6886 TAL1_HUMAN P17542
TAL1_HUMAN.H11MO.1.A HUMAN:TAL1 15 A 1 vvdvhRRCAGvTGbb HOCOMOCOv11 ChIP-Seq 0.828 0.73 68 76 500 Tal-related factors{1.2.3} Tal / HEN-like factors{1.2.3.1} 11556 6886 TAL1_HUMAN P17542
TFAP4_HUMAN.H11MO.0.A HUMAN:TFAP4 10 A 0 hCAGCTGdKb HOCOMOCOv11 ChIP-Seq 0.923 7 503 bHLH-ZIP factors{1.2.6} AP-4{1.2.6.4} 11745 7023 TFAP4_HUMAN Q01664
TFE2_HUMAN.H11MO.0.A HUMAN:TCF3 11 A 0 vMCASCTGShn HOCOMOCOv11 ChIP-Seq 0.926 0.977 9 60 503 E2A-related factors{1.2.1} E2A (TCF-3, ITF-1){1.2.1.0.1} 11633 6929 TFE2_HUMAN P15923
TFE3_HUMAN.H11MO.0.B HUMAN:TFE3 10 B 0 dGTCACGTGA HOCOMOCOv11 ChIP-Seq 0.483 1.0 2 30 478 bHLH-ZIP factors{1.2.6} TFE3-like factors{1.2.6.1} 11752 7030 TFE3_HUMAN P19532
TFEB_HUMAN.H11MO.0.C HUMAN:TFEB 9 C 0 dGTCACGTG HOCOMOCOv9 Integrative 301 bHLH-ZIP factors{1.2.6} TFE3-like factors{1.2.6.1} 11753 7942 TFEB_HUMAN P19484
TWST1_HUMAN.H11MO.0.A HUMAN:TWIST1 17 A 0 vCAKMTGKWWbbvRTYW HOCOMOCOv11 ChIP-Seq 0.969 0.539 9 8 497 Tal-related factors{1.2.3} Twist-like factors{1.2.3.2} 12428 7291 TWST1_HUMAN Q15672
TWST1_HUMAN.H11MO.1.A HUMAN:TWIST1 10 A 1 nvCATSTGKW HOCOMOCOv11 ChIP-Seq 0.971 0.567 9 8 502 Tal-related factors{1.2.3} Twist-like factors{1.2.3.2} 12428 7291 TWST1_HUMAN Q15672
USF1_HUMAN.H11MO.0.A HUMAN:USF1 12 A 0 vGTCACGTGvbb HOCOMOCOv11 ChIP-Seq 0.998 0.98 59 7 485 bHLH-ZIP factors{1.2.6} USF factors{1.2.6.2} 12593 7391 USF1_HUMAN P22415
USF2_HUMAN.H11MO.0.A HUMAN:USF2 19 A 0 vvGTCACGTGvbvvbbvbb HOCOMOCOv10 ChIP-Seq 0.998 0.998 23 10 501 bHLH-ZIP factors{1.2.6} USF factors{1.2.6.2} 12594 7392 USF2_HUMAN Q15853