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PWMs for transcription factors
Model Transcription factor Model length Quality
 Model rank Consensus Model release Data source Best auROC (human) Best auROC (mouse) Peak sets in benchmark (human) Peak sets in benchmark (mouse) Aligned words TF family TF subfamily HGNC MGI EntrezGene UniProt ID UniProt AC
FOXA1_HUMAN.H11MO.0.A HUMAN:FOXA1 12 A 0 TGTTTACWYWdb HOCOMOCOv11 ChIP-Seq 0.988 0.974 199 28 500 Forkhead box (FOX) factors{3.3.1} FOXA{3.3.1.1} 5021 3169 FOXA1_HUMAN P55317
FOXA2_HUMAN.H11MO.0.A HUMAN:FOXA2 12 A 0 TGTTTACWbWdb HOCOMOCOv11 ChIP-Seq 0.982 0.988 22 34 500 Forkhead box (FOX) factors{3.3.1} FOXA{3.3.1.1} 5022 3170 FOXA2_HUMAN Q9Y261
FOXA3_HUMAN.H11MO.0.B HUMAN:FOXA3 13 B 0 bhTGTTTACWbWd HOCOMOCOv11 ChIP-Seq 0.988 6 500 Forkhead box (FOX) factors{3.3.1} FOXA{3.3.1.1} 5023 3171 FOXA3_HUMAN P55318
FOXB1_HUMAN.H11MO.0.D HUMAN:FOXB1 17 D 0 dbvWWTATTTACATWRb HOCOMOCOv10 HT-SELEX 6619 Forkhead box (FOX) factors{3.3.1} FOXB{3.3.1.2} 3799 27023 FOXB1_HUMAN Q99853
FOXC1_HUMAN.H11MO.0.C HUMAN:FOXC1 15 C 0 bnhTGTTTACWTAvS HOCOMOCOv9 Integrative 26 Forkhead box (FOX) factors{3.3.1} FOXC{3.3.1.3} 3800 2296 FOXC1_HUMAN Q12948
FOXC2_HUMAN.H11MO.0.D HUMAN:FOXC2 15 D 0 KhTTGTTdTGYCAGd HOCOMOCOv9 Integrative 5 Forkhead box (FOX) factors{3.3.1} FOXC{3.3.1.3} 3801 2303 FOXC2_HUMAN Q99958
FOXD1_HUMAN.H11MO.0.D HUMAN:FOXD1 15 D 0 nhhTSTTTAChWhvR HOCOMOCOv9 Integrative 22 Forkhead box (FOX) factors{3.3.1} FOXD{3.3.1.4} 3802 2297 FOXD1_HUMAN Q16676
FOXD2_HUMAN.H11MO.0.D HUMAN:FOXD2 19 D 0 WRdRTMAATRTTWWYdTAR HOCOMOCOv10 HT-SELEX 968 Forkhead box (FOX) factors{3.3.1} FOXD{3.3.1.4} 3803 2306 FOXD2_HUMAN O60548
FOXD3_HUMAN.H11MO.0.D HUMAN:FOXD3 15 D 0 bbTGTTTnYhYddbh HOCOMOCOv11 ChIP-Seq 0.786 11 465 Forkhead box (FOX) factors{3.3.1} FOXD{3.3.1.4} 3804 27022 FOXD3_HUMAN Q9UJU5
FOXF1_HUMAN.H11MO.0.D HUMAN:FOXF1 11 D 0 nTGTTTATbWW HOCOMOCOv9 Integrative 8 Forkhead box (FOX) factors{3.3.1} FOXF{3.3.1.6} 3809 2294 FOXF1_HUMAN Q12946
FOXF2_HUMAN.H11MO.0.D HUMAN:FOXF2 11 D 0 TGTTTAChTWd HOCOMOCOv9 Integrative 26 Forkhead box (FOX) factors{3.3.1} FOXF{3.3.1.6} 3810 2295 FOXF2_HUMAN Q12947
FOXG1_HUMAN.H11MO.0.D HUMAN:FOXG1 17 D 0 dWTGTTTMYdWdTdKWb HOCOMOCOv10 HT-SELEX 306 Forkhead box (FOX) factors{3.3.1} FOXG{3.3.1.7} 3811 2290 FOXG1_HUMAN P55316
FOXH1_HUMAN.H11MO.0.A HUMAN:FOXH1 9 A 0 WGTGKATTb HOCOMOCOv11 ChIP-Seq 0.973 7 487 Forkhead box (FOX) factors{3.3.1} FOXH{3.3.1.8} 3814 8928 FOXH1_HUMAN O75593
FOXI1_HUMAN.H11MO.0.B HUMAN:FOXI1 12 B 0 hWbTGATTGGYb HOCOMOCOv9 Integrative 210 Forkhead box (FOX) factors{3.3.1} FOXI{3.3.1.9} 3815 2299 FOXI1_HUMAN Q12951
FOXJ2_HUMAN.H11MO.0.C HUMAN:FOXJ2 10 C 0 TRTTTATYTd HOCOMOCOv9 Integrative 41 Forkhead box (FOX) factors{3.3.1} FOXJ{3.3.1.10} 24818 55810 FOXJ2_HUMAN Q9P0K8
FOXJ3_HUMAN.H11MO.0.A HUMAN:FOXJ3 13 A 0 dTGTTTATKKTTd HOCOMOCOv9 Integrative 550 Forkhead box (FOX) factors{3.3.1} FOXJ{3.3.1.10} 29178 22887 FOXJ3_HUMAN Q9UPW0
FOXJ3_HUMAN.H11MO.1.B HUMAN:FOXJ3 13 B 1 WKKTTWWTGTTTW HOCOMOCOv9 Integrative 499 Forkhead box (FOX) factors{3.3.1} FOXJ{3.3.1.10} 29178 22887 FOXJ3_HUMAN Q9UPW0
FOXK1_HUMAN.H11MO.0.A HUMAN:FOXK1 10 A 0 TGTTThYhhb HOCOMOCOv11 ChIP-Seq 0.857 0.781 11 4 506 Forkhead box (FOX) factors{3.3.1} FOXK{3.3.1.11} 23480 221937 FOXK1_HUMAN P85037
FOXL1_HUMAN.H11MO.0.D HUMAN:FOXL1 19 D 0 bbWTTGTTTGTTTAYWTTW HOCOMOCOv10 HT-SELEX 1207 Forkhead box (FOX) factors{3.3.1} FOXL{3.3.1.12} 3817 2300 FOXL1_HUMAN Q12952
FOXM1_HUMAN.H11MO.0.A HUMAN:FOXM1 12 A 0 TRTTTRYWbWbn HOCOMOCOv11 ChIP-Seq 0.882 66 500 Forkhead box (FOX) factors{3.3.1} FOXM{3.3.1.13} 3818 2305 FOXM1_HUMAN Q08050
FOXO1_HUMAN.H11MO.0.A HUMAN:FOXO1 12 A 0 dbbbTGTTKhYn HOCOMOCOv11 ChIP-Seq 0.883 0.901 9 21 500 Forkhead box (FOX) factors{3.3.1} FOXO{3.3.1.15} 3819 2308 FOXO1_HUMAN Q12778
FOXO3_HUMAN.H11MO.0.B HUMAN:FOXO3 10 B 0 bbTGTTTWCh HOCOMOCOv11 ChIP-Seq 0.668 0.947 2 7 500 Forkhead box (FOX) factors{3.3.1} FOXO{3.3.1.15} 3821 2309 FOXO3_HUMAN O43524
FOXO4_HUMAN.H11MO.0.C HUMAN:FOXO4 9 C 0 bTGTTTAbK HOCOMOCOv9 Integrative 28 Forkhead box (FOX) factors{3.3.1} FOXO{3.3.1.15} 7139 4303 FOXO4_HUMAN P98177
FOXO6_HUMAN.H11MO.0.D HUMAN:FOXO6 13 D 0 dhbWTGTTTACdh HOCOMOCOv10 HT-SELEX 3391 Forkhead box (FOX) factors{3.3.1} FOXO{3.3.1.15} 24814 FOXO6_HUMAN A8MYZ6
FOXP1_HUMAN.H11MO.0.A HUMAN:FOXP1 9 A 0 KbTGTTTMY HOCOMOCOv11 ChIP-Seq 0.887 21 296 Forkhead box (FOX) factors{3.3.1} FOXP{3.3.1.16} 3823 27086 FOXP1_HUMAN Q9H334
FOXP2_HUMAN.H11MO.0.C HUMAN:FOXP2 9 C 0 bTGTTTMCh HOCOMOCOv11 ChIP-Seq 0.962 2 500 Forkhead box (FOX) factors{3.3.1} FOXP{3.3.1.16} 13875 93986 FOXP2_HUMAN O15409
FOXP3_HUMAN.H11MO.0.D HUMAN:FOXP3 9 D 0 WATKTGWTT HOCOMOCOv9 Integrative 9 Forkhead box (FOX) factors{3.3.1} FOXP{3.3.1.16} 6106 50943 FOXP3_HUMAN Q9BZS1
FOXQ1_HUMAN.H11MO.0.C HUMAN:FOXQ1 12 C 0 nRTTGTTTATKT HOCOMOCOv9 Integrative 13 Forkhead box (FOX) factors{3.3.1} FOXQ{3.3.1.17} 20951 94234 FOXQ1_HUMAN Q9C009
FOXA1_HUMAN.H11DI.0.A HUMAN:FOXA1 16 A 0 nnnTGTTTACWYWdbn HOCOMOCOv11 ChIP-Seq 0.992 0.98 199 28 502 Forkhead box (FOX) factors{3.3.1} FOXA{3.3.1.1} 5021 3169 FOXA1_HUMAN P55317
FOXA2_HUMAN.H11DI.0.A HUMAN:FOXA2 16 A 0 nbnbTGTTTACWbWdb HOCOMOCOv11 ChIP-Seq 0.984 0.992 22 34 520 Forkhead box (FOX) factors{3.3.1} FOXA{3.3.1.1} 5022 3170 FOXA2_HUMAN Q9Y261
FOXH1_HUMAN.H11DI.0.A HUMAN:FOXH1 12 A 0 nTGTGGATTbnv HOCOMOCOv11 ChIP-Seq 0.982 7 502 Forkhead box (FOX) factors{3.3.1} FOXH{3.3.1.8} 3814 8928 FOXH1_HUMAN O75593
FOXK1_HUMAN.H11DI.0.A HUMAN:FOXK1 12 A 0 nbTGTTThYnbn HOCOMOCOv11 ChIP-Seq 0.86 0.914 11 4 502 Forkhead box (FOX) factors{3.3.1} FOXK{3.3.1.11} 23480 221937 FOXK1_HUMAN P85037
FOXM1_HUMAN.H11DI.0.A HUMAN:FOXM1 14 A 0 dnTRTTTRYhbWdn HOCOMOCOv11 ChIP-Seq 0.906 66 502 Forkhead box (FOX) factors{3.3.1} FOXM{3.3.1.13} 3818 2305 FOXM1_HUMAN Q08050
FOXO1_HUMAN.H11DI.0.A HUMAN:FOXO1 13 A 0 nnbbbTGTTThYn HOCOMOCOv11 ChIP-Seq 0.885 0.92 9 21 364 Forkhead box (FOX) factors{3.3.1} FOXO{3.3.1.15} 3819 2308 FOXO1_HUMAN Q12778
FOXO3_HUMAN.H11DI.0.B HUMAN:FOXO3 11 B 0 bbTGTTTMChn HOCOMOCOv11 ChIP-Seq 0.684 0.952 2 7 499 Forkhead box (FOX) factors{3.3.1} FOXO{3.3.1.15} 3821 2309 FOXO3_HUMAN O43524
FOXP1_HUMAN.H11DI.0.A HUMAN:FOXP1 12 A 0 bbTGTTThYnbn HOCOMOCOv11 ChIP-Seq 0.917 21 533 Forkhead box (FOX) factors{3.3.1} FOXP{3.3.1.16} 3823 27086 FOXP1_HUMAN Q9H334
FOXP2_HUMAN.H11DI.0.C HUMAN:FOXP2 12 C 0 nbbbTGTTTWYn HOCOMOCOv11 ChIP-Seq 0.97 2 509 Forkhead box (FOX) factors{3.3.1} FOXP{3.3.1.16} 13875 93986 FOXP2_HUMAN O15409
FOXA1_MOUSE.H11MO.0.A MOUSE:Foxa1 10 A 0 TGTTTACWYW HOCOMOCOv11 ChIP-Seq 0.98 0.978 199 28 501 Forkhead box (FOX) factors{3.3.1} FOXA{3.3.1.1} 1347472 15375 FOXA1_MOUSE P35582
FOXA2_MOUSE.H11MO.0.A MOUSE:Foxa2 13 A 0 bnhTGTTTACWbW HOCOMOCOv11 ChIP-Seq 0.977 0.992 22 34 500 Forkhead box (FOX) factors{3.3.1} FOXA{3.3.1.1} 1347476 15376 FOXA2_MOUSE P35583
FOXA3_MOUSE.H11MO.0.A MOUSE:Foxa3 13 A 0 bhTGTTTACWbWd HOCOMOCOv11 ChIP-Seq 0.988 6 500 Forkhead box (FOX) factors{3.3.1} FOXA{3.3.1.1} 1347477 15377 FOXA3_MOUSE P35584
FOXC1_MOUSE.H11MO.0.C MOUSE:Foxc1 15 C 0 bnhTGTTTACWTAvS HOCOMOCOv9 Integrative 26 Forkhead box (FOX) factors{3.3.1} FOXC{3.3.1.3} 1347466 17300 FOXC1_MOUSE Q61572
FOXC2_MOUSE.H11MO.0.D MOUSE:Foxc2 15 D 0 KhTTGTTdTGYCAGd HOCOMOCOv9 Integrative 5 Forkhead box (FOX) factors{3.3.1} FOXC{3.3.1.3} 1347481 14234 FOXC2_MOUSE Q61850
FOXD3_MOUSE.H11MO.0.C MOUSE:Foxd3 15 C 0 bbTGTTTnYhYddbh HOCOMOCOv11 ChIP-Seq 0.786 11 465 Forkhead box (FOX) factors{3.3.1} FOXD{3.3.1.4} 1347473 15221 FOXD3_MOUSE Q61060
FOXF1_MOUSE.H11MO.0.D MOUSE:Foxf1 11 D 0 nTGTTTATbWW HOCOMOCOv9 Integrative 8 Forkhead box (FOX) factors{3.3.1} FOXF{3.3.1.6} 1347470 15227 FOXF1_MOUSE Q61080
FOXF2_MOUSE.H11MO.0.D MOUSE:Foxf2 11 D 0 TGTTTAChTWd HOCOMOCOv9 Integrative 26 Forkhead box (FOX) factors{3.3.1} FOXF{3.3.1.6} 1347479 14238 FOXF2_MOUSE O54743
FOXI1_MOUSE.H11MO.0.B MOUSE:Foxi1 12 B 0 hWbTGATTGGYb HOCOMOCOv9 Integrative 210 Forkhead box (FOX) factors{3.3.1} FOXI{3.3.1.9} 1096329 14233 FOXI1_MOUSE Q922I5
FOXJ2_MOUSE.H11MO.0.C MOUSE:Foxj2 10 C 0 TRTTTATYTd HOCOMOCOv9 Integrative 41 Forkhead box (FOX) factors{3.3.1} FOXJ{3.3.1.10} 1926805 60611 FOXJ2_MOUSE Q9ES18
FOXJ3_MOUSE.H11MO.0.A MOUSE:Foxj3 13 A 0 dTGTTTATKKTTd HOCOMOCOv9 Integrative 550 Forkhead box (FOX) factors{3.3.1} FOXJ{3.3.1.10} 2443432 230700 FOXJ3_MOUSE Q8BUR3
FOXJ3_MOUSE.H11MO.1.B MOUSE:Foxj3 13 B 1 WKKTTWWTGTTTW HOCOMOCOv9 Integrative 499 Forkhead box (FOX) factors{3.3.1} FOXJ{3.3.1.10} 2443432 230700 FOXJ3_MOUSE Q8BUR3
FOXK1_MOUSE.H11MO.0.A MOUSE:Foxk1 11 A 0 bbTGTTKMYnb HOCOMOCOv11 ChIP-Seq 0.846 0.891 11 4 500 Forkhead box (FOX) factors{3.3.1} FOXK{3.3.1.11} 1347488 17425 FOXK1_MOUSE P42128
FOXL2_MOUSE.H11MO.0.C MOUSE:Foxl2 11 C 0 TGTTTWYhWWh HOCOMOCOv11 ChIP-Seq 0.926 2 501 Forkhead box (FOX) factors{3.3.1} FOXL{3.3.1.12} 1349428 26927 FOXL2_MOUSE O88470
FOXM1_MOUSE.H11MO.0.B MOUSE:Foxm1 12 B 0 TRTTTRYWbWbn HOCOMOCOv11 ChIP-Seq 0.882 66 500 Forkhead box (FOX) factors{3.3.1} FOXM{3.3.1.13} 1347487 FOXM1_MOUSE O08696
FOXO1_MOUSE.H11MO.0.A MOUSE:Foxo1 10 A 0 bbnTGTTTWC HOCOMOCOv11 ChIP-Seq 0.881 0.934 9 21 500 Forkhead box (FOX) factors{3.3.1} FOXO{3.3.1.15} 1890077 56458 FOXO1_MOUSE Q9R1E0
FOXO3_MOUSE.H11MO.0.B MOUSE:Foxo3 10 B 0 bbTGTTTACh HOCOMOCOv11 ChIP-Seq 0.668 0.948 2 7 500 Forkhead box (FOX) factors{3.3.1} FOXO{3.3.1.15} 1890081 56484 FOXO3_MOUSE Q9WVH4
FOXO4_MOUSE.H11MO.0.C MOUSE:Foxo4 9 C 0 bTGTTTAbK HOCOMOCOv9 Integrative 28 Forkhead box (FOX) factors{3.3.1} FOXO{3.3.1.15} 1891915 54601 FOXO4_MOUSE Q9WVH3
FOXP2_MOUSE.H11MO.0.A MOUSE:Foxp2 9 A 0 nTGTTTMYn HOCOMOCOv9 Integrative 2075 Forkhead box (FOX) factors{3.3.1} FOXP{3.3.1.16} 2148705 114142 FOXP2_MOUSE P58463
FOXP3_MOUSE.H11MO.0.D MOUSE:Foxp3 9 D 0 WATKTGWTT HOCOMOCOv9 Integrative 9 Forkhead box (FOX) factors{3.3.1} FOXP{3.3.1.16} 1891436 20371 FOXP3_MOUSE Q99JB6
FOXQ1_MOUSE.H11MO.0.C MOUSE:Foxq1 12 C 0 nRTTGTTTATKT HOCOMOCOv9 Integrative 13 Forkhead box (FOX) factors{3.3.1} FOXQ{3.3.1.17} 1298228 15220 FOXQ1_MOUSE O70220
FOXA1_MOUSE.H11DI.0.A MOUSE:Foxa1 16 A 0 nbnnTGTTTACWYWdn HOCOMOCOv11 ChIP-Seq 0.987 0.984 199 28 510 Forkhead box (FOX) factors{3.3.1} FOXA{3.3.1.1} 1347472 15375 FOXA1_MOUSE P35582
FOXA2_MOUSE.H11DI.0.A MOUSE:Foxa2 16 A 0 nbnhTGTTTACWYWdn HOCOMOCOv11 ChIP-Seq 0.985 0.994 22 34 501 Forkhead box (FOX) factors{3.3.1} FOXA{3.3.1.1} 1347476 15376 FOXA2_MOUSE P35583
FOXA3_MOUSE.H11DI.0.A MOUSE:Foxa3 16 A 0 nbbhTGTTTACWYWdn HOCOMOCOv11 ChIP-Seq 0.993 6 515 Forkhead box (FOX) factors{3.3.1} FOXA{3.3.1.1} 1347477 15377 FOXA3_MOUSE P35584
FOXD3_MOUSE.H11DI.0.B MOUSE:Foxd3 16 B 0 nbnWGTTThYhYdvbn HOCOMOCOv11 ChIP-Seq 0.814 11 415 Forkhead box (FOX) factors{3.3.1} FOXD{3.3.1.4} 1347473 15221 FOXD3_MOUSE Q61060
FOXK1_MOUSE.H11DI.0.A MOUSE:Foxk1 12 A 0 nbTGTTThYnbn HOCOMOCOv11 ChIP-Seq 0.86 0.914 11 4 502 Forkhead box (FOX) factors{3.3.1} FOXK{3.3.1.11} 1347488 17425 FOXK1_MOUSE P42128
FOXL2_MOUSE.H11DI.0.C MOUSE:Foxl2 14 C 0 nbnTGTTTWYhhWn HOCOMOCOv11 ChIP-Seq 0.943 2 500 Forkhead box (FOX) factors{3.3.1} FOXL{3.3.1.12} 1349428 26927 FOXL2_MOUSE O88470
FOXO1_MOUSE.H11DI.0.A MOUSE:Foxo1 11 A 0 nbbTGTTTMCn HOCOMOCOv11 ChIP-Seq 0.878 0.934 9 21 500 Forkhead box (FOX) factors{3.3.1} FOXO{3.3.1.15} 1890077 56458 FOXO1_MOUSE Q9R1E0
FOXO3_MOUSE.H11DI.0.B MOUSE:Foxo3 12 B 0 nbbTGTTTAChn HOCOMOCOv11 ChIP-Seq 0.666 0.953 2 7 500 Forkhead box (FOX) factors{3.3.1} FOXO{3.3.1.15} 1890081 56484 FOXO3_MOUSE Q9WVH4