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PWMs for transcription factors
Model Transcription factor Model length Quality
 Model rank Consensus Model release Data source Best auROC (human) Best auROC (mouse) Peak sets in benchmark (human) Peak sets in benchmark (mouse) Aligned words TF family TF subfamily HGNC MGI EntrezGene UniProt ID UniProt AC
BARH1_HUMAN.H11MO.0.D HUMAN:BARHL1 13 D 0 TAAWYGbYnhTWA HOCOMOCOv10 HT-SELEX 5695 NK-related factors{3.1.2} BARHL{3.1.2.1} 953 56751 BARH1_HUMAN Q9BZE3
BARH2_HUMAN.H11MO.0.D HUMAN:BARHL2 18 D 0 vhTAAWYGnYbhhWWWhd HOCOMOCOv10 HT-SELEX 41168 NK-related factors{3.1.2} BARHL{3.1.2.1} 954 343472 BARH2_HUMAN Q9NY43
BARX1_HUMAN.H11MO.0.D HUMAN:BARX1 12 D 0 nWMAKKSYTThh HOCOMOCOv11 ChIP-Seq 0.608 0.831 2 2 461 NK-related factors{3.1.2} BARX{3.1.2.2} 955 56033 BARX1_HUMAN Q9HBU1
BARX2_HUMAN.H11MO.0.D HUMAN:BARX2 10 D 0 hYnWTAATKR HOCOMOCOv9 Integrative 14 NK-related factors{3.1.2} BARX{3.1.2.2} 956 8538 BARX2_HUMAN Q9UMQ3
BSH_HUMAN.H11MO.0.D HUMAN:BSX 14 D 0 WWWbbvbhTAAYbd HOCOMOCOv10 HT-SELEX 8218 NK-related factors{3.1.2} BSX{3.1.2.3} 20450 390259 BSH_HUMAN Q3C1V8
DLX1_HUMAN.H11MO.0.D HUMAN:DLX1 16 D 0 dhWWWWddbbWAATTd HOCOMOCOv10 HT-SELEX 16332 NK-related factors{3.1.2} DLX{3.1.2.5} 2914 1745 DLX1_HUMAN P56177
DLX2_HUMAN.H11MO.0.D HUMAN:DLX2 8 D 0 ATAATTAn HOCOMOCOv9 Integrative 6 NK-related factors{3.1.2} DLX{3.1.2.5} 2915 1746 DLX2_HUMAN Q07687
DLX3_HUMAN.H11MO.0.C HUMAN:DLX3 10 C 0 RMTAATTRvh HOCOMOCOv9 Integrative 35 NK-related factors{3.1.2} DLX{3.1.2.5} 2916 1747 DLX3_HUMAN O60479
DLX4_HUMAN.H11MO.0.D HUMAN:DLX4 16 D 0 YAATTAbnnhhWWWWd HOCOMOCOv10 HT-SELEX 2360 NK-related factors{3.1.2} DLX{3.1.2.5} 2917 1748 DLX4_HUMAN Q92988
DLX5_HUMAN.H11MO.0.D HUMAN:DLX5 11 D 0 WRATTRYWKbb HOCOMOCOv11 ChIP-Seq 0.909 2 465 NK-related factors{3.1.2} DLX{3.1.2.5} 2918 1749 DLX5_HUMAN P56178
DLX6_HUMAN.H11MO.0.D HUMAN:DLX6 15 D 0 hWddddnnnTAATTR HOCOMOCOv10 HT-SELEX 1138 NK-related factors{3.1.2} DLX{3.1.2.5} 2919 1750 DLX6_HUMAN P56179
EMX1_HUMAN.H11MO.0.D HUMAN:EMX1 12 D 0 TAATTARbbhWh HOCOMOCOv10 HT-SELEX 31003 NK-related factors{3.1.2} EMX{3.1.2.6} 3340 2016 EMX1_HUMAN Q04741
EMX2_HUMAN.H11MO.0.D HUMAN:EMX2 12 D 0 TAATTARbdhhh HOCOMOCOv10 HT-SELEX 36122 NK-related factors{3.1.2} EMX{3.1.2.6} 3341 2018 EMX2_HUMAN Q04743
HME1_HUMAN.H11MO.0.D HUMAN:EN1 17 D 0 vbTAATTAvbhhWWWWd HOCOMOCOv10 HT-SELEX 817 NK-related factors{3.1.2} EN (Engrailed-like factors){3.1.2.7} 3342 2019 HME1_HUMAN Q05925
HME2_HUMAN.H11MO.0.D HUMAN:EN2 11 D 0 nnbRRTTRvnn HOCOMOCOv10 HT-SELEX 9521 NK-related factors{3.1.2} EN (Engrailed-like factors){3.1.2.7} 3343 2020 HME2_HUMAN P19622
HMX1_HUMAN.H11MO.0.D HUMAN:HMX1 17 D 0 dYTAATTGnYnnWTWAK HOCOMOCOv10 HT-SELEX 34 NK-related factors{3.1.2} NK-5/HMX{3.1.2.18} 5017 3166 HMX1_HUMAN Q9NP08
HMX2_HUMAN.H11MO.0.D HUMAN:HMX2 11 D 0 nWTAAKTGnbh HOCOMOCOv10 HT-SELEX 1221 NK-related factors{3.1.2} NK-5/HMX{3.1.2.18} 5018 3167 HMX2_HUMAN A2RU54
HMX3_HUMAN.H11MO.0.D HUMAN:HMX3 11 D 0 nnYTAATTGbh HOCOMOCOv10 HT-SELEX 38692 NK-related factors{3.1.2} NK-5/HMX{3.1.2.18} 5019 340784 HMX3_HUMAN A6NHT5
LBX2_HUMAN.H11MO.0.D HUMAN:LBX2 11 D 0 vYTAATTRGnb HOCOMOCOv10 HT-SELEX 1425 NK-related factors{3.1.2} LBX{3.1.2.10} 15525 85474 LBX2_HUMAN Q6XYB7
MSX1_HUMAN.H11MO.0.D HUMAN:MSX1 18 D 0 WWATTRbdhbhTAATTRb HOCOMOCOv10 HT-SELEX 34415 NK-related factors{3.1.2} MSX{3.1.2.11} 7391 4487 MSX1_HUMAN P28360
MSX2_HUMAN.H11MO.0.D HUMAN:MSX2 7 D 0 TAATTnb HOCOMOCOv9 Integrative 12 NK-related factors{3.1.2} MSX{3.1.2.11} 7392 4488 MSX2_HUMAN P35548
NANOG_HUMAN.H11MO.0.A HUMAN:NANOG 17 A 0 nbhWTTSWnATGYWRWb HOCOMOCOv11 ChIP-Seq 0.92 0.928 15 38 499 NK-related factors{3.1.2} NANOG{3.1.2.12} 20857 79923 NANOG_HUMAN Q9H9S0
NANOG_HUMAN.H11MO.1.B HUMAN:NANOG 11 B 1 vRSCCATYAvn HOCOMOCOv11 ChIP-Seq 0.769 0.825 15 38 500 NK-related factors{3.1.2} NANOG{3.1.2.12} 20857 79923 NANOG_HUMAN Q9H9S0
NKX21_HUMAN.H11MO.0.A HUMAN:NKX2-1 10 A 0 bWKGAGWGbh HOCOMOCOv11 ChIP-Seq 0.92 0.917 14 9 501 NK-related factors{3.1.2} NK-2.1{3.1.2.14} 11825 7080 NKX21_HUMAN P43699
NKX22_HUMAN.H11MO.0.D HUMAN:NKX2-2 8 D 0 dSAGWGvh HOCOMOCOv11 ChIP-Seq 0.492 0.789 2 5 500 NK-related factors{3.1.2} NK-2.2{3.1.2.15} 7835 4821 NKX22_HUMAN O95096
NKX23_HUMAN.H11MO.0.D HUMAN:NKX2-3 11 D 0 ndbAAGTGKbh HOCOMOCOv10 HT-SELEX 1260 NK-related factors{3.1.2} NK-4{3.1.2.17} 7836 159296 NKX23_HUMAN Q8TAU0
NKX25_HUMAN.H11MO.0.B HUMAN:NKX2-5 8 B 0 bbRAGWGv HOCOMOCOv11 ChIP-Seq 0.697 0.86 2 7 499 NK-related factors{3.1.2} NK-4{3.1.2.17} 2488 1482 NKX25_HUMAN P52952
NKX28_HUMAN.H11MO.0.C HUMAN:NKX2-8 9 C 0 bTCAAGGAb HOCOMOCOv9 Integrative 6 NK-related factors{3.1.2} NK-2.2{3.1.2.15} 16364 26257 NKX28_HUMAN O15522
NKX31_HUMAN.H11MO.0.C HUMAN:NKX3-1 12 C 0 nbdRAGTGbYWd HOCOMOCOv11 ChIP-Seq 0.792 0.662 11 10 501 NK-related factors{3.1.2} NK-3{3.1.2.16} 7838 4824 NKX31_HUMAN Q99801
NKX32_HUMAN.H11MO.0.C HUMAN:NKX3-2 10 C 0 WTAAGTGbhh HOCOMOCOv11 ChIP-Seq 0.982 6 501 NK-related factors{3.1.2} NK-3{3.1.2.16} 951 579 NKX32_HUMAN P78367
NKX61_HUMAN.H11MO.0.B HUMAN:NKX6-1 19 B 0 vRhdRATKdvndWWWRAWd HOCOMOCOv11 ChIP-Seq 0.433 0.961 3 8 500 NK-related factors{3.1.2} NK-6{3.1.2.19} 7839 4825 NKX61_HUMAN P78426
NKX61_HUMAN.H11MO.1.B HUMAN:NKX6-1 7 B 1 hAATGRv HOCOMOCOv11 ChIP-Seq 0.547 0.846 3 8 500 NK-related factors{3.1.2} NK-6{3.1.2.19} 7839 4825 NKX61_HUMAN P78426
NKX62_HUMAN.H11MO.0.D HUMAN:NKX6-2 11 D 0 ndWTAATKRbn HOCOMOCOv10 HT-SELEX 8076 NK-related factors{3.1.2} NK-6{3.1.2.19} 19321 84504 NKX62_HUMAN Q9C056
NOTO_HUMAN.H11MO.0.D HUMAN:NOTO 11 D 0 vYTAATTWRnb HOCOMOCOv10 HT-SELEX 26150 NK-related factors{3.1.2} NOTO{3.1.2.20} 31839 344022 NOTO_HUMAN A8MTQ0
TLX1_HUMAN.H11MO.0.D HUMAN:TLX1 17 D 0 hYKKYAvbndvMYnRKd HOCOMOCOv9 Integrative 50 NK-related factors{3.1.2} TLX{3.1.2.21} 5056 3195 TLX1_HUMAN P31314
VAX1_HUMAN.H11MO.0.D HUMAN:VAX1 18 D 0 dvTAATTARbvKWAWTWd HOCOMOCOv10 HT-SELEX 50 NK-related factors{3.1.2} VAX{3.1.2.22} 12660 11023 VAX1_HUMAN Q5SQQ9
VAX2_HUMAN.H11MO.0.D HUMAN:VAX2 16 D 0 dndddvbTAATTARbR HOCOMOCOv10 HT-SELEX 51 NK-related factors{3.1.2} VAX{3.1.2.22} 12661 25806 VAX2_HUMAN Q9UIW0
VENTX_HUMAN.H11MO.0.D HUMAN:VENTX 19 D 0 bvYTAATYRbYhhhhhWWd HOCOMOCOv10 HT-SELEX 9943 NK-related factors{3.1.2} VENTX{3.1.2.23} 13639 27287 VENTX_HUMAN O95231
BARX1_HUMAN.H11DI.0.D HUMAN:BARX1 12 D 0 nbWAAKKRTTTh HOCOMOCOv11 ChIP-Seq 0.566 0.832 2 2 462 NK-related factors{3.1.2} BARX{3.1.2.2} 955 56033 BARX1_HUMAN Q9HBU1
NANOG_HUMAN.H11DI.0.A HUMAN:NANOG 19 A 0 nbbYWTTSWnWTKYWRWbn HOCOMOCOv11 ChIP-Seq 0.939 0.943 15 38 497 NK-related factors{3.1.2} NANOG{3.1.2.12} 20857 79923 NANOG_HUMAN Q9H9S0
NKX21_HUMAN.H11DI.0.A HUMAN:NKX2-1 13 A 0 nbYKGAGWGbnhn HOCOMOCOv11 ChIP-Seq 0.938 0.927 14 9 501 NK-related factors{3.1.2} NK-2.1{3.1.2.14} 11825 7080 NKX21_HUMAN P43699
NKX22_HUMAN.H11DI.0.B HUMAN:NKX2-2 10 B 0 nYbRAGTGbn HOCOMOCOv11 ChIP-Seq 0.389 0.818 2 5 510 NK-related factors{3.1.2} NK-2.2{3.1.2.15} 7835 4821 NKX22_HUMAN O95096
NKX25_HUMAN.H11DI.0.B HUMAN:NKX2-5 10 B 0 nhdGAGWGbn HOCOMOCOv11 ChIP-Seq 0.749 0.889 2 7 518 NK-related factors{3.1.2} NK-4{3.1.2.17} 2488 1482 NKX25_HUMAN P52952
NKX31_HUMAN.H11DI.0.A HUMAN:NKX3-1 11 A 0 nbWRWGTRYYh HOCOMOCOv11 ChIP-Seq 0.844 0.798 11 10 427 NK-related factors{3.1.2} NK-3{3.1.2.16} 7838 4824 NKX31_HUMAN Q99801
NKX61_HUMAN.H11DI.0.B HUMAN:NKX6-1 22 B 0 ddRhdRATKdvndWWWRAWddn HOCOMOCOv11 ChIP-Seq 0.462 0.978 3 8 503 NK-related factors{3.1.2} NK-6{3.1.2.19} 7839 4825 NKX61_HUMAN P78426
BARX1_MOUSE.H11MO.0.C MOUSE:Barx1 12 C 0 bbWAAdKGYYWh HOCOMOCOv11 ChIP-Seq 0.529 0.819 2 2 150 NK-related factors{3.1.2} BARX{3.1.2.2} 103124 12022 BARX1_MOUSE Q9ER42
BARX2_MOUSE.H11MO.0.D MOUSE:Barx2 10 D 0 hYnWTAATKR HOCOMOCOv9 Integrative 14 NK-related factors{3.1.2} BARX{3.1.2.2} 109617 12023 BARX2_MOUSE O08686
DLX2_MOUSE.H11MO.0.D MOUSE:Dlx2 8 D 0 ATAATTAn HOCOMOCOv9 Integrative 6 NK-related factors{3.1.2} DLX{3.1.2.5} 94902 13392 DLX2_MOUSE P40764
DLX3_MOUSE.H11MO.0.C MOUSE:Dlx3 10 C 0 RMTAATTRvh HOCOMOCOv9 Integrative 35 NK-related factors{3.1.2} DLX{3.1.2.5} 94903 13393 DLX3_MOUSE Q64205
DLX5_MOUSE.H11MO.0.C MOUSE:Dlx5 11 C 0 WRATTRYWKbb HOCOMOCOv11 ChIP-Seq 0.909 2 465 NK-related factors{3.1.2} DLX{3.1.2.5} 101926 13395 DLX5_MOUSE P70396
MSX2_MOUSE.H11MO.0.D MOUSE:Msx2 7 D 0 TAATTnb HOCOMOCOv9 Integrative 12 NK-related factors{3.1.2} MSX{3.1.2.11} 97169 17702 MSX2_MOUSE Q03358
NANOG_MOUSE.H11MO.0.A MOUSE:Nanog 17 A 0 bbYWTTSWnWTKYWRAd HOCOMOCOv11 ChIP-Seq 0.914 0.939 15 38 500 NK-related factors{3.1.2} NANOG{3.1.2.12} 1919200 71950 NANOG_MOUSE Q80Z64
NANOG_MOUSE.H11MO.1.A MOUSE:Nanog 11 A 1 vRSCCATYAvn HOCOMOCOv11 ChIP-Seq 0.769 0.825 15 38 500 NK-related factors{3.1.2} NANOG{3.1.2.12} 1919200 71950 NANOG_MOUSE Q80Z64
NKX21_MOUSE.H11MO.0.A MOUSE:Nkx2-1 10 A 0 bbWKGAGWGb HOCOMOCOv11 ChIP-Seq 0.923 0.92 14 9 500 NK-related factors{3.1.2} NK-2.1{3.1.2.14} 108067 21869 NKX21_MOUSE P50220
NKX22_MOUSE.H11MO.0.A MOUSE:Nkx2-2 11 A 0 bTbRAGWGbbb HOCOMOCOv11 ChIP-Seq 0.399 0.82 2 5 500 NK-related factors{3.1.2} NK-2.2{3.1.2.15} 97347 18088 NKX22_MOUSE P42586
NKX25_MOUSE.H11MO.0.A MOUSE:Nkx2-5 10 A 0 nbYbRAGWGS HOCOMOCOv11 ChIP-Seq 0.612 0.896 2 7 500 NK-related factors{3.1.2} NK-4{3.1.2.17} 97350 18091 NKX25_MOUSE P42582
NKX28_MOUSE.H11MO.0.C MOUSE:Nkx2-8 9 C 0 bTCAAGGAb HOCOMOCOv9 Integrative 6 NK-related factors{3.1.2} NK-2.2{3.1.2.15} 1270158 18094 NKX28_MOUSE O70584
NKX31_MOUSE.H11MO.0.C MOUSE:Nkx3-1 12 C 0 nbdRAGTGbYWd HOCOMOCOv11 ChIP-Seq 0.792 0.662 11 10 501 NK-related factors{3.1.2} NK-3{3.1.2.16} 97352 18095 NKX31_MOUSE P97436
NKX32_MOUSE.H11MO.0.B MOUSE:Nkx3-2 10 B 0 WTAAGTGbhh HOCOMOCOv11 ChIP-Seq 0.982 6 501 NK-related factors{3.1.2} NK-3{3.1.2.16} 108015 12020 NKX32_MOUSE P97503
NKX61_MOUSE.H11MO.0.A MOUSE:Nkx6-1 19 A 0 MhWdATKdvhWWWWRAWdd HOCOMOCOv11 ChIP-Seq 0.379 0.953 3 8 498 NK-related factors{3.1.2} NK-6{3.1.2.19} 1206039 18096 NKX61_MOUSE Q99MA9
NKX61_MOUSE.H11MO.1.A MOUSE:Nkx6-1 9 A 1 dWhAATGRv HOCOMOCOv11 ChIP-Seq 0.448 0.867 3 8 500 NK-related factors{3.1.2} NK-6{3.1.2.19} 1206039 18096 NKX61_MOUSE Q99MA9
TLX1_MOUSE.H11MO.0.D MOUSE:Tlx1 17 D 0 hYKKYAvbndvMYnRKd HOCOMOCOv9 Integrative 50 NK-related factors{3.1.2} TLX{3.1.2.21} 98769 TLX1_MOUSE P43345
BARX1_MOUSE.H11DI.0.C MOUSE:Barx1 12 C 0 nbWAAKKRTTTh HOCOMOCOv11 ChIP-Seq 0.566 0.832 2 2 462 NK-related factors{3.1.2} BARX{3.1.2.2} 103124 12022 BARX1_MOUSE Q9ER42
DLX5_MOUSE.H11DI.0.C MOUSE:Dlx5 16 C 0 nWRATTRbWKbbYdbn HOCOMOCOv11 ChIP-Seq 0.932 2 381 NK-related factors{3.1.2} DLX{3.1.2.5} 101926 13395 DLX5_MOUSE P70396
NANOG_MOUSE.H11DI.0.A MOUSE:Nanog 22 A 0 nbbYWTTvWnWTKYWRAdndnn HOCOMOCOv10 ChIP-Seq 0.924 0.944 15 38 513 NK-related factors{3.1.2} NANOG{3.1.2.12} 1919200 71950 NANOG_MOUSE Q80Z64
NKX21_MOUSE.H11DI.0.A MOUSE:Nkx2-1 13 A 0 nbWbRAGWGbbhn HOCOMOCOv11 ChIP-Seq 0.905 0.937 14 9 502 NK-related factors{3.1.2} NK-2.1{3.1.2.14} 108067 21869 NKX21_MOUSE P50220
NKX22_MOUSE.H11DI.0.A MOUSE:Nkx2-2 10 A 0 nYbRAGTGbn HOCOMOCOv11 ChIP-Seq 0.389 0.818 2 5 510 NK-related factors{3.1.2} NK-2.2{3.1.2.15} 97347 18088 NKX22_MOUSE P42586
NKX25_MOUSE.H11DI.0.B MOUSE:Nkx2-5 11 B 0 nbhKGAGTGbn HOCOMOCOv11 ChIP-Seq 0.662 0.882 2 7 525 NK-related factors{3.1.2} NK-4{3.1.2.17} 97350 18091 NKX25_MOUSE P42582
NKX31_MOUSE.H11DI.0.B MOUSE:Nkx3-1 11 B 0 nbWRWGTRYYh HOCOMOCOv11 ChIP-Seq 0.844 0.798 11 10 427 NK-related factors{3.1.2} NK-3{3.1.2.16} 97352 18095 NKX31_MOUSE P97436
NKX32_MOUSE.H11DI.0.B MOUSE:Nkx3-2 12 B 0 nWTAAGTGbdYn HOCOMOCOv11 ChIP-Seq 0.979 6 585 NK-related factors{3.1.2} NK-3{3.1.2.16} 108015 12020 NKX32_MOUSE P97503
NKX61_MOUSE.H11DI.0.A MOUSE:Nkx6-1 22 A 0 ddRhdRAKKdbhdWWWRAWddn HOCOMOCOv11 ChIP-Seq 0.435 0.975 3 8 510 NK-related factors{3.1.2} NK-6{3.1.2.19} 1206039 18096 NKX61_MOUSE Q99MA9