Check the newest release v13
PWMs for transcription factors
Model Transcription factor Model length Quality
 Model rank Consensus Model release Data source Best auROC (human) Best auROC (mouse) Peak sets in benchmark (human) Peak sets in benchmark (mouse) Aligned words TF family TF subfamily HGNC MGI EntrezGene UniProt ID UniProt AC
ALX1_HUMAN.H11MO.0.B HUMAN:ALX1 12 B 0 vTRATYGnATTA HOCOMOCOv9 Integrative 33 Paired-related HD factors{3.1.3} ALX{3.1.3.1} 1494 8092 ALX1_HUMAN Q15699
ALX3_HUMAN.H11MO.0.D HUMAN:ALX3 11 D 0 TAATTARMTWW HOCOMOCOv10 HT-SELEX 8583 Paired-related HD factors{3.1.3} ALX{3.1.3.1} 449 257 ALX3_HUMAN O95076
ALX4_HUMAN.H11MO.0.D HUMAN:ALX4 12 D 0 hTAATTARATTA HOCOMOCOv10 HT-SELEX 23663 Paired-related HD factors{3.1.3} ALX{3.1.3.1} 450 60529 ALX4_HUMAN Q9H161
ARX_HUMAN.H11MO.0.D HUMAN:ARX 13 D 0 hTAATYTAATTWv HOCOMOCOv10 HT-SELEX 623 Paired-related HD factors{3.1.3} ARX{3.1.3.3} 18060 170302 ARX_HUMAN Q96QS3
CRX_HUMAN.H11MO.0.B HUMAN:CRX 13 B 0 hvRdvGGATTAdv HOCOMOCOv11 ChIP-Seq 0.933 8 500 Paired-related HD factors{3.1.3} OTX{3.1.3.17} 2383 1406 CRX_HUMAN O43186
DMBX1_HUMAN.H11MO.0.D HUMAN:DMBX1 20 D 0 hhvhWWWWWbYYRATTAvnn HOCOMOCOv10 HT-SELEX 29 Paired-related HD factors{3.1.3} DMBX{3.1.3.4} 19026 127343 DMBX1_HUMAN Q8NFW5
DPRX_HUMAN.H11MO.0.D HUMAN:DPRX 11 D 0 nvGGATTAdSn HOCOMOCOv10 HT-SELEX 46619 Paired-related HD factors{3.1.3} DPRX{3.1.3.5} 32166 503834 DPRX_HUMAN A6NFQ7
DRGX_HUMAN.H11MO.0.D HUMAN:DRGX 11 D 0 TAATYTAATTA HOCOMOCOv10 HT-SELEX 10544 Paired-related HD factors{3.1.3} DRGX{3.1.3.6} 21536 644168 DRGX_HUMAN A6NNA5
DUX4_HUMAN.H11MO.0.A HUMAN:DUX4 11 A 0 TGATTRRRTTA HOCOMOCOv11 ChIP-Seq 0.996 5 500 Paired-related HD factors{3.1.3} DUX{3.1.3.7} 50800 100288687 DUX4_HUMAN Q9UBX2
DUXA_HUMAN.H11MO.0.D HUMAN:DUXA 11 D 0 TGATTARvTYR HOCOMOCOv10 HT-SELEX 2685 Paired-related HD factors{3.1.3} DUX{3.1.3.7} 32179 503835 DUXA_HUMAN A6NLW8
ESX1_HUMAN.H11MO.0.D HUMAN:ESX1 17 D 0 vbTAATTAvbnhWWWWd HOCOMOCOv10 HT-SELEX 8289 Paired-related HD factors{3.1.3} ESX{3.1.3.8} 14865 80712 ESX1_HUMAN Q8N693
GSC2_HUMAN.H11MO.0.D HUMAN:GSC2 11 D 0 ddvGGATKRRn HOCOMOCOv10 HT-SELEX 610 Paired-related HD factors{3.1.3} GSC{3.1.3.9} 4613 2928 GSC2_HUMAN O15499
GSC_HUMAN.H11MO.0.D HUMAN:GSC 11 D 0 ddvGGATTAdb HOCOMOCOv10 HT-SELEX 1242 Paired-related HD factors{3.1.3} GSC{3.1.3.9} 4612 145258 GSC_HUMAN P56915
HESX1_HUMAN.H11MO.0.D HUMAN:HESX1 16 D 0 nKCYGRCWCnTRRnhY HOCOMOCOv9 Integrative 8 Paired-related HD factors{3.1.3} HESX{3.1.3.10} 4877 8820 HESX1_HUMAN Q9UBX0
ISX_HUMAN.H11MO.0.D HUMAN:ISX 16 D 0 bTAATTARnhhWhhdd HOCOMOCOv10 HT-SELEX 14859 Paired-related HD factors{3.1.3} ISX{3.1.3.12} 28084 91464 ISX_HUMAN Q2M1V0
MIXL1_HUMAN.H11MO.0.D HUMAN:MIXL1 11 D 0 vbTAATTvvdn HOCOMOCOv10 HT-SELEX 220 Paired-related HD factors{3.1.3} MIX{3.1.3.14} 13363 83881 MIXL1_HUMAN Q9H2W2
NOBOX_HUMAN.H11MO.0.C HUMAN:NOBOX 9 C 0 hTAATTGvb HOCOMOCOv9 Integrative 66 Paired-related HD factors{3.1.3} NOBOX{3.1.3.15} 22448 135935 NOBOX_HUMAN O60393
OTX1_HUMAN.H11MO.0.D HUMAN:OTX1 8 D 0 nGGATTAn HOCOMOCOv9 Integrative 8 Paired-related HD factors{3.1.3} OTX{3.1.3.17} 8521 5013 OTX1_HUMAN P32242
OTX2_HUMAN.H11MO.0.A HUMAN:OTX2 11 A 0 ddRGGATTAdv HOCOMOCOv11 ChIP-Seq 0.863 0.886 5 18 500 Paired-related HD factors{3.1.3} OTX{3.1.3.17} 8522 5015 OTX2_HUMAN P32243
PHX2A_HUMAN.H11MO.0.D HUMAN:PHOX2A 11 D 0 TAATYTAATTA HOCOMOCOv10 HT-SELEX 7919 Paired-related HD factors{3.1.3} PHOX{3.1.3.18} 691 401 PHX2A_HUMAN O14813
PHX2B_HUMAN.H11MO.0.D HUMAN:PHOX2B 11 D 0 WAATYTAATTA HOCOMOCOv10 HT-SELEX 24552 Paired-related HD factors{3.1.3} PHOX{3.1.3.18} 9143 8929 PHX2B_HUMAN Q99453
PITX1_HUMAN.H11MO.0.D HUMAN:PITX1 9 D 0 vRGGMTTWd HOCOMOCOv11 ChIP-Seq 0.544 0.885 2 4 500 Paired-related HD factors{3.1.3} PITX{3.1.3.19} 9004 5307 PITX1_HUMAN P78337
PITX2_HUMAN.H11MO.0.D HUMAN:PITX2 10 D 0 YKGGATTWvh HOCOMOCOv9 Integrative 17 Paired-related HD factors{3.1.3} PITX{3.1.3.19} 9005 5308 PITX2_HUMAN Q99697
PITX3_HUMAN.H11MO.0.D HUMAN:PITX3 18 D 0 dddRdWWhvdvGGATTAd HOCOMOCOv10 HT-SELEX 7586 Paired-related HD factors{3.1.3} PITX{3.1.3.19} 9006 5309 PITX3_HUMAN O75364
PROP1_HUMAN.H11MO.0.D HUMAN:PROP1 11 D 0 WAATKGvRTTW HOCOMOCOv11 ChIP-Seq 0.921 3 500 Paired-related HD factors{3.1.3} PROP{3.1.3.20} 9455 5626 PROP1_HUMAN O75360
PRRX1_HUMAN.H11MO.0.D HUMAN:PRRX1 7 D 0 TAATCTG HOCOMOCOv9 Integrative 4 Paired-related HD factors{3.1.3} PRRX{3.1.3.21} 9142 5396 PRRX1_HUMAN P54821
PRRX2_HUMAN.H11MO.0.C HUMAN:PRRX2 7 C 0 hTAATTR HOCOMOCOv9 Integrative 65 Paired-related HD factors{3.1.3} PRRX{3.1.3.21} 21338 51450 PRRX2_HUMAN Q99811
RAX2_HUMAN.H11MO.0.D HUMAN:RAX2 12 D 0 hTAATTRRhYhW HOCOMOCOv10 HT-SELEX 33721 Paired-related HD factors{3.1.3} RAX{3.1.3.22} 18286 84839 RAX2_HUMAN Q96IS3
RHXF1_HUMAN.H11MO.0.D HUMAN:RHOXF1 11 D 0 nvbGGAThWdv HOCOMOCOv10 HT-SELEX 3731 Paired-related HD factors{3.1.3} RHOX{3.1.3.23} 29993 158800 RHXF1_HUMAN Q8NHV9
RX_HUMAN.H11MO.0.D HUMAN:RAX 11 D 0 hTAATTRvYhn HOCOMOCOv10 HT-SELEX 340 Paired-related HD factors{3.1.3} RAX{3.1.3.22} 18662 30062 RX_HUMAN Q9Y2V3
SHOX2_HUMAN.H11MO.0.D HUMAN:SHOX2 17 D 0 bTAATTARbhhWWWWdd HOCOMOCOv10 HT-SELEX 30757 Paired-related HD factors{3.1.3} SHOX{3.1.3.25} 10854 6474 SHOX2_HUMAN O60902
SHOX_HUMAN.H11MO.0.D HUMAN:SHOX 17 D 0 bTAATTARbhhWWWWdd HOCOMOCOv10 HT-SELEX 17808 Paired-related HD factors{3.1.3} SHOX{3.1.3.25} 10853 6473 SHOX_HUMAN O15266
UNC4_HUMAN.H11MO.0.D HUMAN:UNCX 11 D 0 TAATYTAATTA HOCOMOCOv10 HT-SELEX 45763 Paired-related HD factors{3.1.3} UNCX{3.1.3.27} 33194 340260 UNC4_HUMAN A6NJT0
VSX1_HUMAN.H11MO.0.D HUMAN:VSX1 14 D 0 TAATTARhhhhhhd HOCOMOCOv10 HT-SELEX 6598 Paired-related HD factors{3.1.3} VSX{3.1.3.28} 12723 30813 VSX1_HUMAN Q9NZR4
VSX2_HUMAN.H11MO.0.D HUMAN:VSX2 12 D 0 hTAATTAGCYdn HOCOMOCOv11 ChIP-Seq 0.996 3 504 Paired-related HD factors{3.1.3} VSX{3.1.3.28} 1975 338917 VSX2_HUMAN P58304
DUX4_HUMAN.H11DI.0.A HUMAN:DUX4 14 A 0 KWTGATTASATTCd HOCOMOCOv11 ChIP-Seq 0.971 5 367 Paired-related HD factors{3.1.3} DUX{3.1.3.7} 50800 100288687 DUX4_HUMAN Q9UBX2
OTX2_HUMAN.H11DI.0.A HUMAN:OTX2 14 A 0 ndddRGGATTAdvn HOCOMOCOv11 ChIP-Seq 0.879 0.92 5 18 500 Paired-related HD factors{3.1.3} OTX{3.1.3.17} 8522 5015 OTX2_HUMAN P32243
PITX1_HUMAN.H11DI.0.D HUMAN:PITX1 10 D 0 ndGGMTTWdn HOCOMOCOv11 ChIP-Seq 0.546 0.884 2 4 500 Paired-related HD factors{3.1.3} PITX{3.1.3.19} 9004 5307 PITX1_HUMAN P78337
ALX1_MOUSE.H11MO.0.B MOUSE:Alx1 12 B 0 vTRATYGnATTA HOCOMOCOv9 Integrative 33 Paired-related HD factors{3.1.3} ALX{3.1.3.1} 104621 216285 ALX1_MOUSE Q8C8B0
CRX_MOUSE.H11MO.0.A MOUSE:Crx 13 A 0 hvRdvGGATTAdv HOCOMOCOv11 ChIP-Seq 0.933 8 500 Paired-related HD factors{3.1.3} OTX{3.1.3.17} 1194883 12951 CRX_MOUSE O54751
HESX1_MOUSE.H11MO.0.D MOUSE:Hesx1 16 D 0 nKCYGRCWCnTRRnhY HOCOMOCOv9 Integrative 8 Paired-related HD factors{3.1.3} HESX{3.1.3.10} 96071 15209 HESX1_MOUSE Q61658
OTX1_MOUSE.H11MO.0.D MOUSE:Otx1 8 D 0 nGGATTAn HOCOMOCOv9 Integrative 8 Paired-related HD factors{3.1.3} OTX{3.1.3.17} 97450 18423 OTX1_MOUSE P80205
OTX2_MOUSE.H11MO.0.A MOUSE:Otx2 12 A 0 dvddRGGATTAd HOCOMOCOv11 ChIP-Seq 0.847 0.904 5 18 500 Paired-related HD factors{3.1.3} OTX{3.1.3.17} 97451 OTX2_MOUSE P80206
PITX1_MOUSE.H11MO.0.C MOUSE:Pitx1 10 C 0 dRGGATTAdv HOCOMOCOv11 ChIP-Seq 0.529 0.875 2 4 196 Paired-related HD factors{3.1.3} PITX{3.1.3.19} 107374 18740 PITX1_MOUSE P70314
PITX2_MOUSE.H11MO.0.D MOUSE:Pitx2 10 D 0 YKGGATTWvh HOCOMOCOv9 Integrative 17 Paired-related HD factors{3.1.3} PITX{3.1.3.19} 109340 18741 PITX2_MOUSE P97474
PROP1_MOUSE.H11MO.0.C MOUSE:Prop1 11 C 0 WAATKGvRTTW HOCOMOCOv11 ChIP-Seq 0.921 3 500 Paired-related HD factors{3.1.3} PROP{3.1.3.20} 109330 19127 PROP1_MOUSE P97458
PRRX1_MOUSE.H11MO.0.D MOUSE:Prrx1 7 D 0 TAATCTG HOCOMOCOv9 Integrative 4 Paired-related HD factors{3.1.3} PRRX{3.1.3.21} 97712 18933 PRRX1_MOUSE P63013
PRRX2_MOUSE.H11MO.0.C MOUSE:Prrx2 7 C 0 hTAATTR HOCOMOCOv9 Integrative 65 Paired-related HD factors{3.1.3} PRRX{3.1.3.21} 98218 20204 PRRX2_MOUSE Q06348
VSX2_MOUSE.H11MO.0.C MOUSE:Vsx2 12 C 0 hTAATTAGCYdn HOCOMOCOv11 ChIP-Seq 0.996 3 504 Paired-related HD factors{3.1.3} VSX{3.1.3.28} 88401 12677 VSX2_MOUSE Q61412
CRX_MOUSE.H11DI.0.A MOUSE:Crx 13 A 0 nvddvRGATTAdn HOCOMOCOv11 ChIP-Seq 0.946 8 501 Paired-related HD factors{3.1.3} OTX{3.1.3.17} 1194883 12951 CRX_MOUSE O54751
OTX2_MOUSE.H11DI.0.A MOUSE:Otx2 14 A 0 ndddRGGATTAdvn HOCOMOCOv11 ChIP-Seq 0.879 0.92 5 18 500 Paired-related HD factors{3.1.3} OTX{3.1.3.17} 97451 OTX2_MOUSE P80206
PITX1_MOUSE.H11DI.0.C MOUSE:Pitx1 11 C 0 nvdGGMTTAdn HOCOMOCOv11 ChIP-Seq 0.523 0.887 2 4 390 Paired-related HD factors{3.1.3} PITX{3.1.3.19} 107374 18740 PITX1_MOUSE P70314
PROP1_MOUSE.H11DI.0.C MOUSE:Prop1 13 C 0 nWAATKAvRTTWn HOCOMOCOv11 ChIP-Seq 0.928 3 501 Paired-related HD factors{3.1.3} PROP{3.1.3.20} 109330 19127 PROP1_MOUSE P97458
VSX2_MOUSE.H11DI.0.C MOUSE:Vsx2 13 C 0 nhTAATTAGCYdn HOCOMOCOv11 ChIP-Seq 0.996 3 524 Paired-related HD factors{3.1.3} VSX{3.1.3.28} 88401 12677 VSX2_MOUSE Q61412